miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagtacttgtttcaggtaaaactgttatcagctcagt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ctccggttcctgctgaactgagccagtacttgtttcaggtaaaactgttatcagctcagt 12
Query: 76 aggcactggag 86
|||||||||||
Sbjct: 11 aggcactggag 1
>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagtacttgtttcaggtaaaactgttatcagctcagt 75
||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||
Sbjct: 71 ctccggttcctgctgaactgagccagtgtttgtttaacatctaactgttatcagctcagt 12
Query: 76 aggcactggag 86
|||||| ||||
Sbjct: 11 aggcacaggag 1
>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||||||||||||||||||||||||||
Sbjct: 68 ctccggttcctgctgaactgagccagt 42
>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
Length = 67
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||||||||||||||||||||||||||
Sbjct: 67 ctccggttcctgctgaactgagccagt 41
>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
(chicken)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagta 43
|||| |||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagta 41
>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 58 aactgttatcagctcagtaggcac 81
||||||||||||||||||||||||
Sbjct: 29 aactgttatcagctcagtaggcac 6
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagt 41
>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
(zebrafish)
Length = 66
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 66 ctcctgttcctgctgaactgagccagt 40
>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
Length = 66
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 66 ctcctgttcctgctgaactgagccagt 40
>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ctccggttcctgctgaactgagccagt 42
|||| ||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagt 41
>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 gttcctgctgaactgagccagt 42
||||||||||||||||||||||
Sbjct: 63 gttcctgctgaactgagccagt 42
>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 gttcctgctgaactgagccagt 42
||||||||||||||||||||||
Sbjct: 63 gttcctgctgaactgagccagt 42
>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio
(zebrafish)
Length = 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 gttcctgctgaactgagccagt 42
||||||||||||||||||||||
Sbjct: 62 gttcctgctgaactgagccagt 41
