miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score =  141 bits (71), Expect = 2e-33
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                      
Query: 17 ctccggttcctgctgaactgagccagtacttgtttcaggtaaaactgttatcagctcagt 76
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ctccggttcctgctgaactgagccagtacttgtttcaggtaaaactgttatcagctcagt 12

                     
Query: 77 aggcactggag 87
          |||||||||||
Sbjct: 11 aggcactggag 1




>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 71

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                      
Query: 17 ctccggttcctgctgaactgagccagtacttgtttcaggtaaaactgttatcagctcagt 76
          |||||||||||||||||||||||||||  |||||| |  |  ||||||||||||||||||
Sbjct: 71 ctccggttcctgctgaactgagccagtgtttgtttaacatctaactgttatcagctcagt 12

                     
Query: 77 aggcactggag 87
          |||||| ||||
Sbjct: 11 aggcacaggag 1




>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 68

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||||||||||||||||||||||||||
Sbjct: 68 ctccggttcctgctgaactgagccagt 42




>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
          Length = 67

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||||||||||||||||||||||||||
Sbjct: 67 ctccggttcctgctgaactgagccagt 41




>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
          (chicken)
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                      
Query: 17 ctccggttcctgctgaactgagccagta 44
          |||| |||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagta 41




>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
          (ghost shark)
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 59 aactgttatcagctcagtaggcac 82
          ||||||||||||||||||||||||
Sbjct: 29 aactgttatcagctcagtaggcac 6



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42




>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 67

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagt 41




>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
          (cape rock hyrax)
          Length = 68

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42




>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis
          carolinensis (green anole)
          Length = 68

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42




>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
          (zebrafish)
          Length = 66

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 66 ctcctgttcctgctgaactgagccagt 40




>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
          Length = 66

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 66 ctcctgttcctgctgaactgagccagt 40




>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
          (Japanese medaka)
          Length = 68

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42




>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
          (Japanese medaka)
          Length = 67

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 17 ctccggttcctgctgaactgagccagt 43
          |||| ||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagt 41




>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 22 gttcctgctgaactgagccagt 43
          ||||||||||||||||||||||
Sbjct: 63 gttcctgctgaactgagccagt 42




>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 22 gttcctgctgaactgagccagt 43
          ||||||||||||||||||||||
Sbjct: 63 gttcctgctgaactgagccagt 42




>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio
          (zebrafish)
          Length = 67

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 22 gttcctgctgaactgagccagt 43
          ||||||||||||||||||||||
Sbjct: 62 gttcctgctgaactgagccagt 41