miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
          (Japanese medaka)
          Length = 89

 Score =  176 bits (89), Expect = 3e-44
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  ctcgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcc 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctcgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcc 60

                                       
Query: 68 ccttcaaccagctactgcgtcgtgaatca 96
          |||||||||||||||||||||||||||||
Sbjct: 61 ccttcaaccagctactgcgtcgtgaatca 89




>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 89

 Score =  137 bits (69), Expect = 3e-32
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                      
Query: 10 cgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcccc 69
          |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 3  cgccttgccgtggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtcccc 62

                                   
Query: 70 ttcaaccagctactgcgtcgtgaat 94
          ||||||||||||||||| |||||||
Sbjct: 63 ttcaaccagctactgcgccgtgaat 87




>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
          (zebrafish)
          Length = 85

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                      
Query: 22 gctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaaccagcta 81
          |||||| ||||||||||||||| |||||||  ||||||||||||||| ||||||||||||
Sbjct: 13 gctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccctttcaaccagcta 72

                       
Query: 82 ctgcgtcgtgaat 94
          ||||| |||||||
Sbjct: 73 ctgcgccgtgaat 85




>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
          (cape rock hyrax)
          Length = 88

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaa 74
          |||| |||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 8  tgctctggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaa 66

                  
Query: 75 ccagctac 82
          ||||||||
Sbjct: 67 ccagctac 74




>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 56 gaggtttggtccccttcaaccagcta 81
          ||||||||||||||||||||||||||
Sbjct: 48 gaggtttggtccccttcaaccagcta 73



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 15 tgctgtggctggtcaaacggaaccaag 41
          |||| ||||||||||||||||||||||
Sbjct: 8  tgctctggctggtcaaacggaaccaag 34




>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 58 ggtttggtccccttcaaccagctac 82
          |||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagctac 69




>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
          intestinalis
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 58 ggtttggtccccttcaaccagctactgc 85
          ||||||||||||||||||||||| ||||
Sbjct: 54 ggtttggtccccttcaaccagctgctgc 81




>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
          carolinensis (green anole)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 57 aggtttggtccccttcaaccagctac 82
          ||||||||||||||| ||||||||||
Sbjct: 49 aggtttggtcccctttaaccagctac 74