miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cgctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cgctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataagg 62
Query: 61 catgggaaaatggggctgc 79
|||||||||||||||||||
Sbjct: 63 catgggaaaatggggctgc 81
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 79.8 bits (40), Expect = 5e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 5 gttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggcatg 64
||||||||||||||||||||||||||||||| | || | ||||||||| || ||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 65 ggaaaatggggc 76
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 4 tgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggcat 63
|||||||||||||||||||||||||||||||| | | | |||||||||||| ||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcat 65
Query: 64 gggaaaatggggc 76
|||||||||||||
Sbjct: 66 gggaaaatggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 1 cgctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataagg 60
||||||||||||||||||||||||||| ||||||| | | | | ||||| |||||| ||
Sbjct: 3 cgctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcataggg 62
Query: 61 catgggaaaatgg 73
|||||||||||||
Sbjct: 63 catgggaaaatgg 75
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 69.9 bits (35), Expect = 4e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 cgctgttcctttttcctatgcatatacttctttga 35
|||||||||||||||||||||||||||||||||||
Sbjct: 3 cgctgttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 gttcctttttcctatgcatatacttctttga 35
|||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 gttcctttttcctatgcatatacttctttga 35
|||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 cctttttcctatgcatatacttctttga 35
||||||||||||||||||||||||||||
Sbjct: 10 cctttttcctatgcatatacttctttga 37
