miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 gctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggc 63
Query: 61 atgggaaaatggggctg 77
|||||||||||||||||
Sbjct: 64 atgggaaaatggggctg 80
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 79.8 bits (40), Expect = 4e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 4 gttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggcatg 63
||||||||||||||||||||||||||||||| | || | ||||||||| || ||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 64 ggaaaatggggc 75
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 3 tgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggcat 62
|||||||||||||||||||||||||||||||| | | | |||||||||||| ||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcat 65
Query: 63 gggaaaatggggc 75
|||||||||||||
Sbjct: 66 gggaaaatggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 1 gctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggc 60
|||||||||||||||||||||||||| ||||||| | | | | ||||| |||||| |||
Sbjct: 4 gctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggc 63
Query: 61 atgggaaaatgg 72
||||||||||||
Sbjct: 64 atgggaaaatgg 75
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gctgttcctttttcctatgcatatacttctttga 34
||||||||||||||||||||||||||||||||||
Sbjct: 4 gctgttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 gttcctttttcctatgcatatacttctttga 34
|||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 gttcctttttcctatgcatatacttctttga 34
|||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 cctttttcctatgcatatacttctttga 34
||||||||||||||||||||||||||||
Sbjct: 10 cctttttcctatgcatatacttctttga 37
