miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00257;mir-194;BAAF04021698.1/401-317 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 168 bits (85), Expect = 8e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 7 gtgcatctcaccagctgtaacagcatctccatatggaaagactcaggcttccagtggagc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcatctcaccagctgtaacagcatctccatatggaaagactcaggcttccagtggagc 60
Query: 67 tgctgttatttgtggcgggacgcct 91
|||||||||||||||||||||||||
Sbjct: 61 tgctgttatttgtggcgggacgcct 85
>RF00257;mir-194;AANH01006690.1/35298-35384 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 12 tctcaccagctgtaacagcatctccatatggaaagactcaggcttccagtggagctgctg 71
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct: 6 tctcaccagctgtaacagcatctccatatggaataattcttgcttccagtggagctgctg 65
Query: 72 ttatttgtggcgggac 87
|||| ||||| |||||
Sbjct: 66 ttatctgtggtgggac 81
>RF00257;mir-194;CAAB01002404.1/6523-6439 31033:Takifugu rubripes
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 61/67 (91%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 12 tctcaccagctgtaacagcatctccatatggaaaga---ctcaggcttccagtggagctg 68
|||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||
Sbjct: 5 tctcaccagctgtaacagcatctccatatggaaaaaaccctctggtttccagtggagctg 64
Query: 69 ctgttat 75
|||||||
Sbjct: 65 ctgttat 71
>RF00257;mir-194;ABPK01009732.1/1842-1763 57307:Labeotropheus
fuelleborni
Length = 80
Score = 73.8 bits (37), Expect = 4e-13
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 16 accagctgtaacagcatctccatatggaaagactcaggcttccagtggagctgctgttat 75
|||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 6 accagctgta-cagcatctccatatggaaaaactgtggct-ccagtggagctgctgttat 63
Query: 76 ttgtggcgggacgcctc 92
||||| ||||| ||||
Sbjct: 64 ctgtggagggacacctc 80
>RF00257;mir-194;CAAE01015008.1/695772-695680 99883:Tetraodon
nigroviridis
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 12 tctcaccagctgtaacagcatctccatatggaaaga 47
|||| |||| ||||||||||||||||||||||||||
Sbjct: 6 tctcgccagttgtaacagcatctccatatggaaaga 41
