miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 ggaatattccatgttttctgtccttcattccaccggagtctgtgcctgtatggaaccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggaatattccatgttttctgtccttcattccaccggagtctgtgcctgtatggaaccaga 67
Query: 61 tttcagtggtgtgaagtgtaaaagacatggggataa 96
||||||||||||||||||||||||||||||||||||
Sbjct: 68 tttcagtggtgtgaagtgtaaaagacatggggataa 103
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 113 bits (57), Expect = 4e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 2 gaatattccatgttttctgtccttcattccaccggagtctgtgcctgtatggaaccagat 61
||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 9 gaatattccatgtgttctatccttcattccaccggagtctgtatgtgtatttaaccagat 68
Query: 62 ttcagtggtgtgaagtgtaaaagacatgg 90
|||||||||||||||||||| ||||||||
Sbjct: 69 ttcagtggtgtgaagtgtaagagacatgg 97
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 103 bits (52), Expect = 4e-22
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 9 ccatgttttctgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtg 68
|||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 12 ccatgtgttctgtccttcattccaccggagtctgt--ctgtttcacaccagatttcagtg 69
Query: 69 gtgtgaagtgtaaaagacatggggata 95
||||||||||||| |||||||||||||
Sbjct: 70 gtgtgaagtgtaagagacatggggata 96
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio
(zebrafish)
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 16 ttctgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaa 75
|||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 23 ttctatccttcattccaccggagtctgtgtagttgttcaatcagatttcagtggtgtgaa 82
Query: 76 gtgta 80
|||||
Sbjct: 83 gtgta 87
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 8 tccatgttttctgtccttcattccaccggagtctgtg 44
||||||| |||| ||||||||||||||||||||||||
Sbjct: 15 tccatgtattctatccttcattccaccggagtctgtg 51
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 56.0 bits (28), Expect = 9e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 18 ctgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaag 76
|||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct: 25 ctgtccttcattccaccggagtctgtctctgca--caaccagatttcagtggagtgaag 81
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 8 tccatgttttctgtccttcattccaccggagtctgt 43
||||||| |||| |||||||||||||||||||||||
Sbjct: 15 tccatgtcttctatccttcattccaccggagtctgt 50
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaagt 77
||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||
Sbjct: 26 tgtccttcattccaccggagtctgt-ctcgtacccaaccagatttcagtggagtgaagt 83
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia
guttata
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/58 (87%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaag 76
||||||||||||||||||||||||| || || |||||||||||||||| ||||||
Sbjct: 26 tgtccttcattccaccggagtctgt--ctctagctaaccagatttcagtggagtgaag 81
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 ctgtccttcattccaccggagtctgtg 44
|||||||||||||||||||||||||||
Sbjct: 24 ctgtccttcattccaccggagtctgtg 50
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaag 76
||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||
Sbjct: 25 tgtccttcattccaccggagtctgt-ctcgtacctaaccagatttcagtggagtgaag 81
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgt 43
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus
(house mouse)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgt 43
|||||||||||||||||||||||||
Sbjct: 25 tgtccttcattccaccggagtctgt 49
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia
porcellus (domestic guinea pig)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgt 43
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgt 43
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtccttcattccaccggagtctgt 43
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
