miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AC193609.2/86167-86080 9031:Gallus gallus
(chicken)
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 7 ctgtgtgtgatgattaggcagtgtattgttagttagctgctcttcatacaccagcaacta 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgtgtgatgattaggcagtgtattgttagttagctgctcttcatacaccagcaacta 60
Query: 67 actacactgccacattagcacatcactg 94
||||||||||||||||||||||||||||
Sbjct: 61 actacactgccacattagcacatcactg 88
>RF00711;mir-449;ABQF01033433.1/2198-2285 59729:Taeniopygia
guttata
Length = 88
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 11 gtgtgatgattaggcagtgtattgttagttagctgctcttcatacaccagcaactaacta 70
||||| ||||||||||||||||||||||||||||| || ||| |||||||||||| ||||
Sbjct: 5 gtgtggtgattaggcagtgtattgttagttagctgttcctcacacaccagcaactgacta 64
Query: 71 cactgccacattagcacatc 90
||||| || |||||||||||
Sbjct: 65 cactgtcagattagcacatc 84
>RF00711;mir-449;ABQO010597990.1/715-803 9315:Macropus eugenii
(tammar wallaby)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 8 tgtgtgtgatgattaggcagtgtattgttagttagctgctcttcata 54
|||||||| ||||| ||||||||||||||||||||||| | ||||||
Sbjct: 2 tgtgtgtggtgattgggcagtgtattgttagttagctgtttttcata 48
>RF00711;mir-449;AAFR03035385.1/17933-17845 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 12 tgtgatgattaggcagtgtattgttagttagctgctcttcata 54
|||| ||||| ||||||||||||||||||||||| | ||||||
Sbjct: 6 tgtggtgattgggcagtgtattgttagttagctgtttttcata 48
