miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 31 gatccataataagtttcatggttttagtttagatttgaactaaaaccatgacctttatta 90
|||||| ||||||| || |||||||||| | |||||||||||||||||||| |||||
Sbjct: 15 gatccaaaataagtgtcgtggttttagtacaaatttgaactaaaaccatgacacttattt 74
Query: 91 tggaacggagggagta 106
|||| |||||||||||
Sbjct: 75 tggatcggagggagta 90
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 21 tactctctctgatccataataagtttcatggttttagtttagatttgaactaaaaccatg 80
||||| ||| |||||| ||||||| |||||||||||||| | ||||| |||||||||| |
Sbjct: 90 tactccctccgatccaaaataagtgtcatggttttagttcaaatttgtactaaaaccacg 31
Query: 81 acctttattatggaacggaggga 103
|| ||||| |||| ||||||||
Sbjct: 30 acacttattttggatcggaggga 8
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 48 atggttttagtttagatttgaactaaaaccatgac 82
|||||||||||| | ||||||||||||||||||||
Sbjct: 32 atggttttagttcaaatttgaactaaaaccatgac 66
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 46 tcatggttttagtttagatttgaactaaaaccat 79
|||||||||||||| | |||||||||||||||||
Sbjct: 65 tcatggttttagttcaaatttgaactaaaaccat 32
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 63 atttgaactaaaaccatgacctttattatggaacggagggagta 106
|||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 48 atttgaactaaaaccacgacaagtattttggaacggagggagta 5
>RF00906;MIR1122;CR626933.1/11895-11804 4571:Triticum turgidum
Length = 92
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 50 ggttttagtttagatttgaactaaaaccatgacctttattatggaacggagg 101
|||||||||| | |||||||||||||||| ||| ||||| ||| |||||||
Sbjct: 34 ggttttagttcaaatttgaactaaaaccaagacacttattttgggacggagg 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 38 aataagtttcatggttttagtttagatttgaactaaaacc 77
||||||| || ||||||||||| | |||||||||||||||
Sbjct: 73 aataagtgtcttggttttagttcaaatttgaactaaaacc 34
>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
Japonica Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 86 tattatggaacggagggagtagg 108
|||||||||||||||||||||||
Sbjct: 25 tattatggaacggagggagtagg 3
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 tattatggaacggagggagtagg 108
|||||||||||||||||||||||
Sbjct: 134 tattatggaacggagggagtagg 156
>RF00906;MIR1122;AM932683.1/22409-22315 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 49 tggttttagtttagatttgaactaaaacca 78
||||||||||| | ||||||||||||||||
Sbjct: 62 tggttttagttcaaatttgaactaaaacca 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tggttttagtttagatttgaactaaaacca 78
||||||||||| | ||||||||||||||||
Sbjct: 33 tggttttagttcaaatttgaactaaaacca 62
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 tattatggaacggagggagtag 107
||||||||||||||||||||||
Sbjct: 25 tattatggaacggagggagtag 4
>RF00906;MIR1122;AAAA02009816.1/6724-6859 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 tattatggaacggagggagtag 107
||||||||||||||||||||||
Sbjct: 112 tattatggaacggagggagtag 133
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 tattatggaacggagggagtag 107
||||||||||||||||||||||
Sbjct: 112 tattatggaacggagggagtag 133
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 tattatggaacggagggagtag 107
||||||||||||||||||||||
Sbjct: 25 tattatggaacggagggagtag 4
