miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 137 bits (69), Expect = 3e-32
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 16 ctccgtgggtggggatttgttgcattacttgtagctgtgtgtagagtattgcacttgtcc 75
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 ctccatgggtggggatttgttgcattacttgtagctgtatgtagagtattgcacttgtcc 64
Query: 76 cggcctgtggaggaaag 92
|||||||||||||||||
Sbjct: 65 cggcctgtggaggaaag 81
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 17 tccgtgggtggggatttgttgcattacttgtagctgtgtgtagagtattgcacttgtccc 76
||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||||
Sbjct: 6 tccgtgggtggggatttgttgcattacttgt-ggtgtgtataaagtattgcacttgtccc 64
Query: 77 ggcctgtggaggaaag 92
|||||||||| |||||
Sbjct: 65 ggcctgtggaagaaag 80
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 22 gggtggggatttgttgcattacttgtagctgtgtgta---gagtattgcacttgtcccgg 78
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcttgtgtctataagagtattgcacttgtcccgg 70
Query: 79 cctgtggaggaaa 91
|||||||||||||
Sbjct: 71 cctgtggaggaaa 83
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 21 tgggtggggatttgttgcattacttgtagctgtgtgtagagtattgcacttgtcccggcc 80
||||||||||||||||||| ||||||| | | | |||| |||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcactacttgt-gttatatgtaaagtattgcacttgtcccggcc 68
Query: 81 tgtggaggaaa 91
|||||| ||||
Sbjct: 69 tgtggaagaaa 79
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 69.9 bits (35), Expect = 6e-12
Identities = 64/73 (87%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 22 gggtggggatttgttgcattacttgtagctgtgtgta---gagtattgcacttgtcccgg 78
||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcatgtgactataagagtattgcacttgtcccgg 70
Query: 79 cctgtggaggaaa 91
|||||||||||||
Sbjct: 71 cctgtggaggaaa 83
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 69.9 bits (35), Expect = 6e-12
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 23 ggtggggatttgttgcattacttgtag-ctgtgtgtagagtattgcacttgtcccggcct 81
||||||||||||| ||||||||||| || || ||| ||||||||||||||||||||||
Sbjct: 12 ggtggggatttgtcgcattacttgtgttctatg-gtaaagtattgcacttgtcccggcct 70
Query: 82 gtggaggaaag 92
|||||||||||
Sbjct: 71 gtggaggaaag 81
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 21 tgggtggggatttgttgcattacttgtagctgtgtgtagagtattgcacttgtcccggcc 80
|||||||||||| | |||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 10 tgggtggggattgggtgcattacttgtgtcc-tgtgtgaagtattgcacttgtcccggcc 68
Query: 81 tgtggaggaaag 92
|||||| |||||
Sbjct: 69 tgtggaagaaag 80
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 16 ctccgtgggtggggatttgttgcattacttgtagctgtg-tgtagagtattgcacttgtc 74
|||| ||||| ||||||||||||||||||||| | | || | |||||||||||||||
Sbjct: 5 ctccctgggttgggatttgttgcattacttgtgggttccctgaacagtattgcacttgtc 64
Query: 75 ccggcctgtggagga 89
|||||||||||||||
Sbjct: 65 ccggcctgtggagga 79
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgtggaggaa 90
||||||||||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgtggaggaa 76
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 tgggtggggatttgttgcattacttgt 47
|||||||||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgt 36
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 agtattgcacttgtcccggcctgtg 84
|||||||||||||||||||||||||
Sbjct: 47 agtattgcacttgtcccggcctgtg 71
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgtggaggaa 90
|||||||||||||||||||||||| |||||
Sbjct: 46 gtattgcacttgtcccggcctgtgtaggaa 75
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 60 agtattgcacttgtcccggcctgtggaggaaag 92
||||||||||||||||||||||| ||| |||||
Sbjct: 48 agtattgcacttgtcccggcctgaggaagaaag 80
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 60 agtattgcacttgtcccggcctgtggaggaaag 92
|||||||||||||||||||||| |||| |||||
Sbjct: 50 agtattgcacttgtcccggcctatggaagaaag 82
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 agtattgcacttgtcccggcctgtg 84
|||||||||||||||||||||||||
Sbjct: 44 agtattgcacttgtcccggcctgtg 68
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgtggagga 89
||||||||||||||||||||||| |||||
Sbjct: 47 gtattgcacttgtcccggcctgttgagga 75
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgtggagga 89
||||||||||||||||||||||| |||||
Sbjct: 48 gtattgcacttgtcccggcctgttgagga 76
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgtggagg 88
||||||||||||||||||||||| ||||
Sbjct: 47 gtattgcacttgtcccggcctgttgagg 74
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgt 83
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgt 83
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgt 83
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgt 83
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 gtattgcacttgtcccggcctgt 83
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 agtattgcacttgtcccggcct 81
||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67
