miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gcccggcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcccggcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgcca 64
Query: 61 gttgaagaactgttgaatgt 80
||||||||||||||||||||
Sbjct: 65 gttgaagaactgttgaatgt 84
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 65
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 66
Query: 66 agaactgttg 75
||||||||||
Sbjct: 67 agaactgttg 76
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
||||||||||||| ||||||||||||||| || | | ||||||||||||||| ||||
Sbjct: 11 cagcagttcttcactggcaagctttatgttctcgtgcaccagctaaagctgccagctgaa 70
Query: 67 gaactgttg 75
|||||||||
Sbjct: 71 gaactgttg 79
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 7 cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 66
|||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||
Sbjct: 11 cagcagttcttcagtggcgagctttatgt-cttgtc--ccagctaaagctgccagttgaa 67
Query: 67 gaactg 72
||||||
Sbjct: 68 gaactg 73
>RF00653;mir-22;AAWZ01029001.1/2472-2561 28377:Anolis carolinensis
(green anole)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 6 gcagcagttcttcagtggcaa-gctttatgtccttctctagtagctaaagctgc-cagtt 63
||||||||||||||| |||| |||||| |||| | | || |||||||||||| |||||
Sbjct: 10 gcagcagttcttcagcggcatcgctttacgtcccttttaagaagctaaagctgcgcagtt 69
Query: 64 gaagaactgttg 75
||||||||||||
Sbjct: 70 gaagaactgttg 81
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 gctaaagctgccagttgaagaactgttg 75
|||||||||||||| |||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgttg 79
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 gctaaagctgccagttgaagaactgttg 75
||||||||||||||||||||| ||||||
Sbjct: 53 gctaaagctgccagttgaagagctgttg 80
>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
(zebrafish)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 taaagctgccagttgaagaactgttg 75
||||||||||||||||||| ||||||
Sbjct: 50 taaagctgccagttgaagagctgttg 75
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 taaagctgccagttgaagaactgttg 75
||||||||||||||||||| ||||||
Sbjct: 54 taaagctgccagttgaagagctgttg 79
