miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 ctgagagacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctgagagacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtg 63
Query: 61 tagtgtttcctactttatggatgagtgtactgtgggcta 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tagtgtttcctactttatggatgagtgtactgtgggcta 102
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 157 bits (79), Expect = 3e-38
Identities = 89/91 (97%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 8 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 67
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 69
Query: 68 tcctactttatggatgagtgtactgtgggct 98
|||||||||||||||||||||||||||||||
Sbjct: 70 tcctactttatggatgagtgtactgtgggct 100
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 133 bits (67), Expect = 5e-31
Identities = 77/79 (97%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 agacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtg 65
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 9 agacagtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtg 67
Query: 66 tttcctactttatggatga 84
|||||||||||||||||||
Sbjct: 68 tttcctactttatggatga 86
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 8 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 67
||||||||||||| ||||||||||| ||||||||||||| | || || ||||||||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 68 tcctactttatggatgagtgtactgt 93
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 8 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 67
|||||||||||| |||||||||||||||||||||||||| | || ||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtt 70
Query: 68 tcctactttatggatgagtgtactgtgggct 98
|||||||||||||||||||||||||| ||||
Sbjct: 71 tcctactttatggatgagtgtactgttggct 101
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 16 gtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactt 75
||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 76 tatggatgagt 86
|||||||||||
Sbjct: 79 tatggatgagt 89
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 83.8 bits (42), Expect = 4e-16
Identities = 78/89 (87%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 6 agacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtg 65
|||||||||||||| |||||||||||||||||||||||| || | || ||||||||
Sbjct: 9 agacagtgcagtcatccataaagtagaaagcactactaaccatccaatca--gtgtagtg 66
Query: 66 tttcctactttatggatgagtgtactgtg 94
|||||||||||||||| ||||| ||||||
Sbjct: 67 tttcctactttatggacgagtgcactgtg 95
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 81.8 bits (41), Expect = 2e-15
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 7 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagg-gtgtagtg 65
||||||| | ||| |||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 10 gacagtggactcatccataaagtagaaagcactactaaacgcctgtgcccaagtgtagtg 69
Query: 66 tttcctactttatggatgagtgtactgtg 94
|||||||||||||||||||||||||||||
Sbjct: 70 tttcctactttatggatgagtgtactgtg 98
