miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 145 bits (73), Expect = 1e-34
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataactat 70
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataactat 66
Query: 71 acaacctactgccttcc 87
|||||||||||||||||
Sbjct: 67 acaacctactgccttcc 83
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 141 bits (71), Expect = 2e-33
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 8 ggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataac 67
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 4 ggatgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagataac 63
Query: 68 tatacaacctactgccttccctg 90
|||||| ||||||||||||||||
Sbjct: 64 tatacagcctactgccttccctg 86
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 129 bits (65), Expect = 7e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataactat 70
|||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataactat 66
Query: 71 acaacctactgccttccctga 91
|||||||||||||||||||||
Sbjct: 67 acaacctactgccttccctga 87
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 5 acaggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagat 64
||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||
Sbjct: 1 acagggtgaggtagtaggttgtgtggtttcggggtagtgattttg-cccgatcagaagat 59
Query: 65 aactatacaacctactgccttccctga 91
||||||||||| |||||||||||||||
Sbjct: 60 aactatacaacatactgccttccctga 86
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 115 bits (58), Expect = 1e-25
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 5 acaggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagat 64
||||| ||||||||||||||||||||||||||||| |||||||| |||| || ||||| |
Sbjct: 1 acagggtgaggtagtaggttgtgtggtttcagggttgtgattttacccc-ataaggagct 59
Query: 65 aactatacaacctactgccttccctg 90
||||||||||||||||||||||||||
Sbjct: 60 aactatacaacctactgccttccctg 85
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 101 bits (51), Expect = 2e-21
Identities = 76/82 (92%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggt-agtgattttgccccaatcaggagataacta 69
|||||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||
Sbjct: 7 tgaggtagtaggttgtgtggtttcaggggcagtgatgttgcccc--tcagaagataacta 64
Query: 70 tacaacctactgccttccctga 91
||||||||||||||||||||||
Sbjct: 65 tacaacctactgccttccctga 86
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataactat 70
|||||||||||||||||||||||||||| || | | | ||||| |||| ||||||||||
Sbjct: 7 tgaggtagtaggttgtgtggtttcagggcagcggtgtcgcccc--tcagcagataactat 64
Query: 71 acaacctactgccttccc 88
||| ||||||||||||||
Sbjct: 65 acagcctactgccttccc 82
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/79 (87%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataactata 71
|||||||||||||| | |||| |||| || ||||||||||||| ||||||||||||||
Sbjct: 8 gaggtagtaggttgcatagtttgagggcagggattttgccccaa--aggagataactata 65
Query: 72 caacctactgccttccctg 90
|||||| ||||||| ||||
Sbjct: 66 caacctgctgcctttcctg 84
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataactat 70
||||||||||| |||| | ||| |||||||| ||||| ||| |||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagataactat 66
Query: 71 acaacctactgccttccctga 91
|||| ||| ||||||||||||
Sbjct: 67 acaatctattgccttccctga 87
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataactat 70
|||||||||||||| ||||||||||||| |||||| ||||||| |||| | |||||||
Sbjct: 7 tgaggtagtaggtt-tgtggtttcagggcagtgatgttgcccc--tcagcaaataactac 63
Query: 71 acaacctactgcctt 85
|||||||||| ||||
Sbjct: 64 acaacctacttcctt 78
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 63.9 bits (32), Expect = 3e-10
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 6 caggatgaggtagtaggttgtgtggtttcagggtagtgatttt--gccccaatcaggaga 63
|||| |||||||||| ||||| | ||| | |||||| |||||| |||||||| || |||
Sbjct: 2 cagggtgaggtagtaagttgtattgttgctgggtagagattttaggccccaattagaaga 61
Query: 64 taactatacaacctactgccttccctg 90
||||||||||||||||| | |||||||
Sbjct: 62 taactatacaacctactactttccctg 88
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 5 acaggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagat 64
|||| |||||||||||| |||| | |||| ||||||||||||||||| | | ||||
Sbjct: 1 acagtatgaggtagtagattgtatagttttggggtagtgattttgccctgtttggaagat 60
Query: 65 aactatacaacctactgccttccctga 91
|||||||||| ||| ||||||||||||
Sbjct: 61 aactatacaatctattgccttccctga 87
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 56 tcaggagataactatacaacctactgccttcc 87
|||||||||||||||||||| |||||||||||
Sbjct: 53 tcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 56 tcaggagataactatacaacctactgccttcc 87
|||||||||||||||||||| |||||||||||
Sbjct: 56 tcaggagataactatacaacttactgccttcc 87
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggtagtgatttt--gccccaatcaggagataact 68
|||||||||| ||||| | ||| |||||| |||||| |||||||| || ||||||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 66
Query: 69 atacaacctactgccttccctg 90
|||||||||||| | |||||||
Sbjct: 67 atacaacctactactttccctg 88
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 59 ggagataactatacaacctactgccttccctga 91
|||||||||||||||| ||| ||||||||||||
Sbjct: 56 ggagataactatacaatctattgccttccctga 88
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 aggagataactatacaacctactgccttcc 87
||||||||||||||||| |||||||||||
Sbjct: 58 aggagataactatacaatttactgccttcc 87
