miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 91.7 bits (46), Expect = 2e-18
Identities = 66/70 (94%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 22 cagagcttagctgattggtgaacagtgat-gtttccctctt-gttcacagtggctaagtt 79
||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||
Sbjct: 13 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 72
Query: 80 ctgcacctga 89
||||||||||
Sbjct: 73 ctgcacctga 82
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 85.7 bits (43), Expect = 1e-16
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 18 ggtgcagagcttagctgattggtgaacagtga-tgtttccctctt-gttcacagtggcta 75
||||||||||||||| |||||||||||||| | || || |||||| ||||||||||||||
Sbjct: 9 ggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggcta 68
Query: 76 agttctgcacctgaa 90
|||||||||||||||
Sbjct: 69 agttctgcacctgaa 83
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/75 (93%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 18 ggtgcagagcttagctgattggtgaacagtga-tgtt-tccctcttgttcacagtggcta 75
|||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||
Sbjct: 9 ggtgcagagcttagctgattggtgaacagtgattgttgttgct-ttgttcacagtggcta 67
Query: 76 agttctgcacctgaa 90
|||||||||||||||
Sbjct: 68 agttctgcacctgaa 82
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 79.8 bits (40), Expect = 6e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 18 ggtgcagagcttagctgattggtgaacagtgatgtttccctcttgttcacagtggctaag 77
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 9 ggtgcagagcttagctgattggtgaacagtgattgaactct-ttgttcacagtggctaag 67
Query: 78 ttctgcacctga 89
||||||| ||||
Sbjct: 68 ttctgcatctga 79
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 65.9 bits (33), Expect = 9e-11
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 21 gcagagcttagctgattggtgaacagtga-tgtttccctc-ttgttcacagtggctaagt 78
||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||
Sbjct: 12 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 71
Query: 79 tctgc 83
|||||
Sbjct: 72 tctgc 76
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 gggtgcagagcttagctgattggtgaac 44
||||||||||||| ||||||||||||||
Sbjct: 8 gggtgcagagcttggctgattggtgaac 35
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 ttgttcacagtggctaagttctgcacc 86
|||||||||||||||||||||| ||||
Sbjct: 53 ttgttcacagtggctaagttcttcacc 79
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcttgttcacagtggctaagttc 80
|||||||||||||||||||||||
Sbjct: 49 tcttgttcacagtggctaagttc 71
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tgttcacagtggctaagttctgcacct 87
|||||||||||||||||||| ||||||
Sbjct: 57 tgttcacagtggctaagttccgcacct 83
>RF00644;mir-27;BAAF04073622.1/5313-5395 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 ttgttcacagtggctaagttctgcacctga 89
||||||||||||||||||||| | ||||||
Sbjct: 53 ttgttcacagtggctaagttcagtacctga 82
