miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;AADN02010981.1/2588-2657 9031:Gallus gallus
(chicken)
Length = 70
Score = 139 bits (70), Expect = 8e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 16 catgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgc 60
Query: 76 tgggtttcca 85
||||||||||
Sbjct: 61 tgggtttcca 70
>RF00651;mir-221;AALT01657316.1/439-370 42254:Sorex araneus
(European shrew)
Length = 70
Score = 91.7 bits (46), Expect = 2e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
||||||||||| ||||||||||||||||| ||| || | |||||||||||||||||||||
Sbjct: 3 tgaacctggcacacaatgtagatttctgtatttatttaacaacagctacattgtctgctg 62
Query: 78 ggtttc 83
||||||
Sbjct: 63 ggtttc 68
>RF00651;mir-221;AAYZ01618848.1/488-419 9978:Ochotona princeps
(American pika)
Length = 70
Score = 91.7 bits (46), Expect = 2e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtattttctgggcaacagctacattgtctgctg 62
Query: 78 ggtttc 83
||||||
Sbjct: 63 ggtttc 68
>RF00651;mir-221;BAAE01085056.1/1241-1173 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 75.8 bits (38), Expect = 9e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctg 77
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtgttt-caattctacagctacattgtctgctg 61
Query: 78 ggtttc 83
||||||
Sbjct: 62 ggtttc 67
>RF00651;mir-221;CU550700.7/20157-20229 7955:Danio rerio
(zebrafish)
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 acagctacattgtctgctgggtttc 83
|||||||||||||||||||||||||
Sbjct: 47 acagctacattgtctgctgggtttc 71
>RF00651;mir-221;BAAE01342535.1/103-172 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 acagctacattgtctgctgggtttc 83
|||||||||||||||||||||||||
Sbjct: 44 acagctacattgtctgctgggtttc 68
