miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01006359.1/1475-1631 39947:Oryza sativa
Japonica Group
Length = 157
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 60 tattatattatggtacggagggagtagca 88
||||||||||||| |||||||||||||||
Sbjct: 30 tattatattatgggacggagggagtagca 2
>RF00906;MIR1122;DQ900687.1/37938-37847 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tatattatggtacggagggagta 85
|||||||||||||||||||||||
Sbjct: 66 tatattatggtacggagggagta 88
>RF00906;MIR1122;EU730897.1/72285-72181 15368:Brachypodium
distachyon
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 aaagtactccctccgacccataataag 33
|||||||||||||||| ||||||||||
Sbjct: 1 aaagtactccctccgatccataataag 27
>RF00906;MIR1122;AP008216.1/17487566-17487411 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 ttatattatggtacggagggagtagca 88
||||||||||| |||||||||||||||
Sbjct: 129 ttatattatgggacggagggagtagca 155
>RF00906;MIR1122;ABRL01001053.1/5989-5833 65489:Oryza barthii
Length = 157
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 62 ttatattatggtacggagggagtagca 88
||||||||||| |||||||||||||||
Sbjct: 28 ttatattatgggacggagggagtagca 2
>RF00906;MIR1122;AY013246.1/69877-69969 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 ttatattatggtacggagggagtagc 87
||||||||||| ||||||||||||||
Sbjct: 66 ttatattatgggacggagggagtagc 91
>RF00906;MIR1122;AAAA02022570.1/2584-2456 39946:Oryza sativa Indica
Group
Length = 129
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tattatattatggtacggagggagta 85
||||||||||||| ||||||||||||
Sbjct: 100 tattatattatgggacggagggagta 125
>RF00906;MIR1122;AC140005.2/42932-42813 39947:Oryza sativa Japonica
Group
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 ttatattatggtacggagggagtagc 87
||||||||||| ||||||||||||||
Sbjct: 93 ttatattatgggacggagggagtagc 118
