miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 101 bits (51), Expect = 2e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 21 tcacgttgagccatacgcacaatacctgaagatgaagttttgttcgttcggctcgcgtta 80
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tcacgttgagcctcacgtacaatacctgaagatgaagttttgttcgttcggctcgcgtta 62
Query: 81 agcaggt 87
||||||
Sbjct: 63 cgcaggt 69
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 20 ctcacgttgagccatacgcacaatacctgaagatgaa---gttttgttcgttcggctcgc 76
|||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct: 2 ctcacgttgagccacacgcacaatgcctgcagatgaaagggttttgttcgttcggctcgc 61
Query: 77 gttaagcag 85
|||| ||||
Sbjct: 62 gttacgcag 70
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 75.8 bits (38), Expect = 9e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 23 acgttgagccatacgcacaatacctgaagatgaagttttgttcgttcggctcgcgttaag 82
||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct: 5 acgttgagccacacgcacaatacatgtggattcagttttgttcgttcggctcgcgttaag 64
Query: 83 ca 84
||
Sbjct: 65 ca 66
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttaagcaggt 87
|||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttaggcaggt 69
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtta 80
||||||||||||||||||||||||
Sbjct: 44 gttttgttcgttcggctcgcgtta 67
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 38 gttttgttcgttcggctcgcgt 59
