miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 133 bits (67), Expect = 1e-30
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 118 gagataggcctgtggcttgcatgaccgaggagctgcatcgtcccctcgctggccgctctt 177
||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 178 tggattgaagggagctctgcatc 200
|||||||||||||||||||||||
Sbjct: 214 tggattgaagggagctctgcatc 236
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 61 gggtggtacagctgctcgttcatggttcccactatccta 99
||||||| | |||||||||||||||||||||||||||||
Sbjct: 48 gggtggttccgctgctcgttcatggttcccactatccta 86
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 125 bits (63), Expect = 3e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 118 gagataggcctgtggcttgcatgaccgaggagctgcatcgtcccctcgctggccgctctt 177
||||||||| ||||| ||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 178 tggattgaagggagctctgcatc 200
|||||||||||||||||||||||
Sbjct: 203 tggattgaagggagctctgcatc 225
Score = 73.8 bits (37), Expect = 9e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 23 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 82
||||||||||||||||||||||| |||| | | |||||| ||| | ||||||||||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtacc-gaagggccggttccgctgctcgttca 70
Query: 83 tggttcccactatccta 99
|||||||||||||||||
Sbjct: 71 tggttcccactatccta 87
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 89.7 bits (45), Expect = 2e-17
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 118 gagataggcctgtggcttgcatgaccgaggagctgcatcgtcccc-tcgctggccgctct 176
||||| ||| ||||| |||||||||||||||||||| |||||||| ||| || ||||| |
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190
Query: 177 ttggattgaagggagctctgcatct 201
||||| |||||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgcatct 215
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 61 gggtggtacagctgctcgttcatggttcccact 93
|||||||||||||||||||||||||||||||||
Sbjct: 48 gggtggtacagctgctcgttcatggttcccact 80
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 89.7 bits (45), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 118 gagataggcctgtggcttgcatgaccgaggagctgcatcgtcccc-tcgctggccgctct 176
||||| ||||||||| ||||||||||||||||||||||||||||| | | | ||||||
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196
Query: 177 ttggattgaagggagctctgc 197
|||||||||||||||||||||
Sbjct: 197 ttggattgaagggagctctgc 217
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 agctgctcgttcatggttcccactatcc 97
||||||||||||||||||||||||||||
Sbjct: 57 agctgctcgttcatggttcccactatcc 84
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 79.8 bits (40), Expect = 1e-14
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 118 gagataggcctgtggcttgcatgaccgaggagctgcatcgtcccctcgctggccgctctt 177
||||||||| ||||| |||||||||| |||||| | ||| | ||| |||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 178 tggattgaagggagctctgcatct 201
||||||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctgcatct 180
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 60.0 bits (30), Expect = 1e-08
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 120 gataggcctgtggcttgcatgaccgaggagctgcatcgtcccctcgctggccgctctttg 179
||||||| | ||||||||||| || |||||||||||| ||| | ||| | |||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcatcaaccctaca-tggaccctctttg 245
Query: 180 gattgaagggagctctgcatct 201
||||||||||||||||||||||
Sbjct: 246 gattgaagggagctctgcatct 267
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 174 tctttggattgaagggagctctgcatct 201
|||||||||||||||||||||| |||||
Sbjct: 174 tctttggattgaagggagctcttcatct 201
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 174 tctttggattgaagggagctctgcatct 201
|||||||||||||||||||||| |||||
Sbjct: 170 tctttggattgaagggagctctacatct 197
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 176 tttggattgaagggagctctgcatct 201
|||||||||||||||||||| |||||
Sbjct: 162 tttggattgaagggagctctacatct 187
