miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
          (Japanese medaka)
          Length = 89

 Score =  151 bits (76), Expect = 2e-36
 Identities = 82/84 (97%)
 Strand = Plus / Plus

                                                                      
Query: 10 cgccttgctgtggctggtcaaacggaaccaagtcaggtgttttagtgaggtttggtcccc 69
          |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3  cgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcccc 62

                                  
Query: 70 ttcaaccagctactgcgtcgtgaa 93
          ||||||||||||||||||||||||
Sbjct: 63 ttcaaccagctactgcgtcgtgaa 86




>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 89

 Score =  139 bits (70), Expect = 8e-33
 Identities = 82/86 (95%)
 Strand = Plus / Plus

                                                                      
Query: 8  cacgccttgctgtggctggtcaaacggaaccaagtcaggtgttttagtgaggtttggtcc 67
          |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 1  cacgccttgccgtggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtcc 60

                                    
Query: 68 ccttcaaccagctactgcgtcgtgaa 93
          ||||||||||||||||||| ||||||
Sbjct: 61 ccttcaaccagctactgcgccgtgaa 86




>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
          (zebrafish)
          Length = 85

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                      
Query: 22 gctggtcaaacggaaccaagtcaggtgttttagtgaggtttggtccccttcaaccagcta 81
          |||||| ||||||||||||||| |||||||  | ||||||||||||| ||||||||||||
Sbjct: 13 gctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccctttcaaccagcta 72

                      
Query: 82 ctgcgtcgtgaa 93
          ||||| ||||||
Sbjct: 73 ctgcgccgtgaa 84




>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
          (cape rock hyrax)
          Length = 88

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tgctgtggctggtcaaacggaaccaagtcaggtgttttagtgaggtttggtccccttcaa 74
          |||| |||||||||||||||||||||||| | | ||   | |||||||||||||||||||
Sbjct: 8  tgctctggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaa 66

                  
Query: 75 ccagctac 82
          ||||||||
Sbjct: 67 ccagctac 74




>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 58/67 (86%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tgctgtggctggtcaaacggaaccaagtcaggtgttttagtgaggtttggtccccttcaa 74
          |||| |||||||||||||||||||||| | |   | || | |||||||||||||||||||
Sbjct: 8  tgctctggctggtcaaacggaaccaagcccgtcttcttcg-gaggtttggtccccttcaa 66

                 
Query: 75 ccagcta 81
          |||||||
Sbjct: 67 ccagcta 73




>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
          Length = 81

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 58 ggtttggtccccttcaaccagctac 82
          |||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagctac 69




>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
          intestinalis
          Length = 92

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 58 ggtttggtccccttcaaccagctactgc 85
          ||||||||||||||||||||||| ||||
Sbjct: 54 ggtttggtccccttcaaccagctgctgc 81




>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
          carolinensis (green anole)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 57 aggtttggtccccttcaaccagctac 82
          ||||||||||||||| ||||||||||
Sbjct: 49 aggtttggtcccctttaaccagctac 74