miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
          Length = 86

 Score =  107 bits (54), Expect = 3e-23
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                      
Query: 17 gacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgta 76
          |||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgta 70

                    
Query: 77 ctatccaggg 86
          ||||||||||
Sbjct: 71 ctatccaggg 80




>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
          (Japanese medaka)
          Length = 86

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                      
Query: 12 ccctggacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatg 71
          ||||||||||||||||||| |||||||||||||   ||  | ||||||||||||||||||
Sbjct: 6  ccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagatg 65

                               
Query: 72 atgtactatccagggtctcat 92
          |||||||||||||||| ||||
Sbjct: 66 atgtactatccagggtttcat 86




>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
          (African savanna elephant)
          Length = 85

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 55/59 (93%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                     
Query: 21 ggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtacta 79
          |||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatga-gacactacagtatagatgatgtacta 72




>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
          (chicken)
          Length = 85

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 61/67 (91%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 12 ccctggacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatg 71
          |||||| | |||||||||||||||||||||||||  ||| | ||||||||||||||||||
Sbjct: 6  ccctgggctggatatcatcatatactgtaagttcactat-gagacactacagtatagatg 64

                 
Query: 72 atgtact 78
          |||||||
Sbjct: 65 atgtact 71




>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
          Length = 85

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 19 caggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtact 78
          |||||||||||| ||||||||||||| | ||||  |||||||||||||||||||||||||
Sbjct: 13 caggatatcatcgtatactgtaagttggctatga-gacactacagtatagatgatgtact 71




>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
          (tammar wallaby)
          Length = 85

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 12 ccctggacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatg 71
          |||||| |||||||||||| ||||||||||||| |  || | ||||||||||||||||||
Sbjct: 6  ccctggccaggatatcatcgtatactgtaagtttgcaat-gagacactacagtatagatg 64

                 
Query: 72 atgtact 78
          |||||||
Sbjct: 65 atgtact 71




>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
          (ghost shark)
          Length = 86

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 21 ggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtacta 79
          ||||||||||||||| |||||||||   ||   ||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatattgtaagttcacaattcagacactacagtatagatgatgtacta 73




>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 85

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                    
Query: 21 ggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtact 78
          |||||||||| ||||||||||||| |  |||  |||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatga-gacactacagtatagatgatgtact 71