miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 1 ctgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggca 60
||||||||||||||||||||||||| ||||||| || || ||||||||||||||| ||||
Sbjct: 5 ctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggca 64
Query: 61 tgggaaaatggggct 75
|||||||||||||||
Sbjct: 65 tgggaaaatggggct 79
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 89.7 bits (45), Expect = 4e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 2 tgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggcat 61
|||||||||||||||||||||||| ||||||||| | | | ||||||||||||| ||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcat 65
Query: 62 gggaaaatggggc 74
|||||||||||||
Sbjct: 66 gggaaaatggggc 78
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 79.8 bits (40), Expect = 4e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 gttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggcatg 62
||||||||||||||||||||||| ||||||||| | | ||||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 63 ggaaaatggggc 74
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 ctgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggca 60
||||||||||||||||||||||||||||||||| | | | ||||| |||||||||||
Sbjct: 5 ctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggca 64
Query: 61 tgggaaaatgg 71
|||||||||||
Sbjct: 65 tgggaaaatgg 75
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 75.8 bits (38), Expect = 7e-14
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 3 gttcctttttcctatgcatatacctctttga-gatctagctttaaagaggcatagggcat 61
||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatagggcat 65
Query: 62 gggaaaatgg 71
||||||||||
Sbjct: 66 gggaaaatgg 75
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 3 gttcctttttcctatgcatatacctctttg-agatctagctttaaagaggcatagggcat 61
||||||||||||||||||||||| |||||| |||||| || |||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaagatctggc-ctaaagaggtatagggcat 65
Query: 62 gggaaaatggggc 74
||||||| |||||
Sbjct: 66 gggaaaacggggc 78
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 1 ctgttcctttttcctatgcatatacctctttga-gatctagctttaaagaggcatagggc 59
||||||||||||||||||||||||| ||||||| ||||| || |||||||| ||| |||
Sbjct: 5 ctgttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatatggc 63
Query: 60 atgggaaaatgg 71
||||||||||||
Sbjct: 64 atgggaaaatgg 75
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 cctttttcctatgcatatacctctttgag 34
|||||||||||||||||||| ||||||||
Sbjct: 10 cctttttcctatgcatatacttctttgag 38
