miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score =  113 bits (57), Expect = 3e-25
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggc 60
          |||||||||||||||||||||||||| ||||||| || || ||||||||||||||| |||
Sbjct: 4  gctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggc 63

                           
Query: 61 atgggaaaatggggctg 77
          |||||||||||||||||
Sbjct: 64 atgggaaaatggggctg 80




>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
          (chicken)
          Length = 87

 Score = 89.7 bits (45), Expect = 5e-18
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                      
Query: 3  tgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggcat 62
          |||||||||||||||||||||||| |||||||||  | | | ||||||||||||| ||||
Sbjct: 6  tgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcat 65

                       
Query: 63 gggaaaatggggc 75
          |||||||||||||
Sbjct: 66 gggaaaatggggc 78




>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
          (tammar wallaby)
          Length = 87

 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                      
Query: 4  gttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggcatg 63
          ||||||||||||||||||||||| |||||||||   |  | ||||||||| |||||||||
Sbjct: 7  gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66

                      
Query: 64 ggaaaatggggc 75
          ||||||||||||
Sbjct: 67 ggaaaatggggc 78




>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 87

 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggc 60
          |||||||||||||||||||||||||||||||||| |  |   | ||||| ||||||||||
Sbjct: 4  gctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggc 63

                      
Query: 61 atgggaaaatgg 72
          ||||||||||||
Sbjct: 64 atgggaaaatgg 75




>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
          (cape rock hyrax)
          Length = 87

 Score = 75.8 bits (38), Expect = 7e-14
 Identities = 64/70 (91%), Gaps = 2/70 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  gttcctttttcctatgcatatacctctttga-gatctagctttaaagaggcatagggcat 62
          ||||||||||||||||||||||| ||||||| ||||| ||  |||||||| |||||||||
Sbjct: 7  gttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatagggcat 65

                    
Query: 63 gggaaaatgg 72
          ||||||||||
Sbjct: 66 gggaaaatgg 75




>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
          gorilla (Western lowland gorilla)
          Length = 87

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 66/73 (90%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  gttcctttttcctatgcatatacctctttg-agatctagctttaaagaggcatagggcat 62
          ||||||||||||||||||||||| |||||| |||||| ||  |||||||| |||||||||
Sbjct: 7  gttcctttttcctatgcatatacttctttgaagatctggc-ctaaagaggtatagggcat 65

                       
Query: 63 gggaaaatggggc 75
          ||||||| |||||
Sbjct: 66 gggaaaacggggc 78




>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 87

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 66/73 (90%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctgttcctttttcctatgcatatacctctttga-gatctagctttaaagaggcataggg 59
          |||||||||||||||||||||||||| ||||||| ||||| ||  |||||||| ||| ||
Sbjct: 4  gctgttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatatgg 62

                       
Query: 60 catgggaaaatgg 72
          |||||||||||||
Sbjct: 63 catgggaaaatgg 75




>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 87

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 7  cctttttcctatgcatatacctctttgag 35
          |||||||||||||||||||| ||||||||
Sbjct: 10 cctttttcctatgcatatacttctttgag 38