miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;AANH01000634.1/21971-22065 69293:Gasterosteus
           aculeatus (three-spined stickleback)
          Length = 95

 Score = 93.7 bits (47), Expect = 5e-19
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Plus

                                                                       
Query: 8   gccagagcatcagcaccttggctttagactgcttactgctttnnnnnnnnnngtctcaca 67
           |||||||||||||||||||||||||||||||||||||||||           || |||||
Sbjct: 2   gccagagcatcagcaccttggctttagactgcttactgctt------atacagtgtcaca 55

                                                    
Query: 68  gttacagtaacagtctacagtcatggctactgatgcctggc 108
           | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 56  g-tacagtaacagtctacagtcatggctactgaagcctggc 95




>RF00662;mir-132;BAAF04066384.1/1751-1845 8090:Oryzias latipes
           (Japanese medaka)
          Length = 95

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 84/98 (85%), Gaps = 7/98 (7%)
 Strand = Plus / Plus

                                                                       
Query: 11  agagcatcagcaccttggctttagactgcttactgctttnnnnnnnnnngtctcacagtt 70
           ||||||||||||||||||||||||||||||||||||||            |||||||| |
Sbjct: 5   agagcatcagcaccttggctttagactgcttactgctt------atacaatctcacag-t 57

                                                 
Query: 71  acagtaacagtctacagtcatggctactgatgcctggc 108
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 58  acagtaacagtctacagtcatggctactgaagcctggc 95




>RF00662;mir-132;BAAF04037894.1/2420-2326 8090:Oryzias latipes
           (Japanese medaka)
          Length = 95

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 70  tacagtaacagtctacagtcatggctactgatgcctggc 108
           ||||||||||||||||||||||||||||||| |||||||
Sbjct: 57  tacagtaacagtctacagtcatggctactgacgcctggc 95



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 accttggctttagactgcttactgct 47
          ||||||||| ||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgct 41




>RF00662;mir-132;CAAK05007784.1/2841-2935 7955:Danio rerio
           (zebrafish)
          Length = 95

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 70  tacagtaacagtctacagtcatggctactga 100
           |||||||||||||||||||||||||||||||
Sbjct: 57  tacagtaacagtctacagtcatggctactga 87



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 22 accttggctttagactgcttactgctt 48
          ||||||||| |||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgctt 42




>RF00662;mir-132;AAVX01172706.1/316-404 7868:Callorhinchus milii
           (ghost shark)
          Length = 89

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 73  agtaacagtctacagtcatggctactga 100
           ||||||||||||||||||||||||||||
Sbjct: 54  agtaacagtctacagtcatggctactga 81




>RF00662;mir-132;ABPM01043889.1/132-226 106582:Maylandia zebra
           (zebra mbuna)
          Length = 95

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 70  tacagtaacagtctacagtcatggctactga 100
           |||||||||||||||||| ||||||||||||
Sbjct: 57  tacagtaacagtctacagacatggctactga 87



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 accttggctttagactgcttactgct 47
          ||||||||| ||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgct 41




>RF00662;mir-132;ABRQ01002353.1/3673-3585 9813:Procavia capensis
          (cape rock hyrax)
          Length = 89

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 gcaccttggctttagactgcttactgc 46
          ||||||||||| |||||||||||||||
Sbjct: 14 gcaccttggctctagactgcttactgc 40