miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00658;mir-21;CAAB01003431.1/24512-24584 31033:Takifugu rubripes
Length = 73
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 17 tcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtctgtaa 76
|||||||||||||||||||||||||| ||||| | || |||||| ||| ||||||||||
Sbjct: 3 tcagatagcttatcagactggtgttggctgttaggttcccatggcaacagcagtctgtaa 62
Query: 77 gctgtctgaag 87
|||||||||||
Sbjct: 63 gctgtctgaag 73
>RF00658;mir-21;BAAF04044466.1/2035-1963 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtctgt 74
|||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 75 aagctgtctga 85
| |||||||||
Sbjct: 61 aggctgtctga 71
>RF00658;mir-21;AADN02025785.1/47934-47863 9031:Gallus gallus
(chicken)
Length = 72
Score = 69.9 bits (35), Expect = 6e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtctgt 74
|||| ||||||||||||||||| ||||||||| ||| ||| |||||| ||||||||| ||
Sbjct: 1 tgtcggatagcttatcagactgatgttgactg-ttggatctcatggcaacaacagtcggt 59
Query: 75 aagctgtctga 85
| |||||||||
Sbjct: 60 aggctgtctga 70
>RF00658;mir-21;AAVX01193435.1/262-191 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtt 48
|||||||||||||||||||||||||||| |||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgtt 34
>RF00658;mir-21;AANH01008078.1/292800-292872 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gtcagatagcttatcagactggtgttgactgtt 48
||||| ||||||||||||||||||||| |||||
Sbjct: 2 gtcagctagcttatcagactggtgttggctgtt 34
