miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
           (Japanese medaka)
          Length = 91

 Score =  119 bits (60), Expect = 1e-26
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgtccgtcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaag 87
           ||||| |||| |||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct: 1   tgtccttcacaaatctttttgcggtctgggcttgctgtttatgaatattaatctgggaag 60

                                       
Query: 88  cccttaccccaaaaagcatttgtggagg 115
           |||||||||||||||||||||| |||||
Sbjct: 61  cccttaccccaaaaagcatttgcggagg 88




>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
           (zebrafish)
          Length = 91

 Score =  113 bits (57), Expect = 7e-25
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                       
Query: 37  cgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaagcccttaccc 96
           ||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||
Sbjct: 10  cgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagcccttaccc 69

                        
Query: 97  caaaaagcatttg 109
           |||||||||||||
Sbjct: 70  caaaaagcatttg 82




>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
           (Japanese medaka)
          Length = 89

 Score =  109 bits (55), Expect = 1e-23
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgtccgtcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaag 87
           |||||||||||||||||||||||||||||||||||||| |||    || | |||||||||
Sbjct: 1   tgtccgtcacgaatctttttgcggtctgggcttgctgtgcat--tcattaatctgggaag 58

                                         
Query: 88  cccttaccccaaaaagcatttgtggaggac 117
           |||||||||||||||||||| |||||||||
Sbjct: 59  cccttaccccaaaaagcattcgtggaggac 88




>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio (zebrafish)
          Length = 89

 Score =  101 bits (51), Expect = 3e-21
 Identities = 75/82 (91%), Gaps = 2/82 (2%)
 Strand = Plus / Plus

                                                                       
Query: 34  tcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaagccctta 93
           ||||||||||||||||||||||||||||||||||  || |||||   |||||||||||||
Sbjct: 7   tcacgaatctttttgcggtctgggcttgctgttctcaactatca--atgggaagccctta 64

                                 
Query: 94  ccccaaaaagcatttgtggagg 115
           |||||||||||||||| |||||
Sbjct: 65  ccccaaaaagcatttgcggagg 86




>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
           aculeatus (three-spined stickleback)
          Length = 88

 Score = 93.7 bits (47), Expect = 6e-19
 Identities = 81/90 (90%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgtccgtcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaag 87
           |||||||||||||||||||||||||||||||||||||| |||  | |  | ||| |||||
Sbjct: 1   tgtccgtcacgaatctttttgcggtctgggcttgctgtgcat--acacgactct-ggaag 57

                                         
Query: 88  cccttaccccaaaaagcatttgtggaggac 117
           |||||||||||||||||||| |||||||||
Sbjct: 58  cccttaccccaaaaagcattggtggaggac 87




>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
          Length = 91

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 37  cgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaagcccttaccc 96
           ||||||||||||||||||||||||||||| ||||| || |   | |||||||||||||||
Sbjct: 10  cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 69

                      
Query: 97  caaaaagcatt 107
           |||||||||||
Sbjct: 70  caaaaagcatt 80




>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
          Length = 93

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 82  gggaagcccttaccccaaaaagcatttgtggaggact 118
           |||||||||||||||||||||||||||||||||||||
Sbjct: 57  gggaagcccttaccccaaaaagcatttgtggaggact 93




>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
          nigroviridis
          Length = 90

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                  
Query: 28 tgtccgtcacgaatctttttgcggtctgggcttgctgttc 67
          ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtccttcacgaatctttttgcggtctgggcttgctgttc 40




>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
           (zebrafish)
          Length = 92

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 69/78 (88%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgtccgtcacgaatctttttgcggtctgggcttgctgtt-cataaat-atcagtctggga 85
           ||||| |||||  |||||||||||||||||||||||||| | ||||| | |||||  |||
Sbjct: 1   tgtccttcacggctctttttgcggtctgggcttgctgttccttaaatcaccagtc-agga 59

                             
Query: 86  agcccttaccccaaaaag 103
           ||||||||||||||||||
Sbjct: 60  agcccttaccccaaaaag 77




>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
          (ghost shark)
          Length = 92

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 38 gaatctttttgcggtctgggcttgctgttc 67
          ||||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgttc 40



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 83  ggaagcccttaccccaaaaagcatttg 109
           ||||||||||||||||||||| |||||
Sbjct: 57  ggaagcccttaccccaaaaagtatttg 83




>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 92

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 atctttttgcggtctgggcttgctgttc 67
          ||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40




>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 88

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                      
Query: 40 atctttttgcggtctgggcttgctgttc 67
          ||||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgttc 51




>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 90

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 atctttttgcggtctgggcttgctgttc 67
          ||||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgttc 38




>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
          carolinensis (green anole)
          Length = 92

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 atctttttgcggtctgggcttgctgttc 67
          ||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40




>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
          (African savanna elephant)
          Length = 92

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 41 tctttttgcggtctgggcttgctgttc 67
          |||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40




>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
          (zebrafish)
          Length = 92

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 41 tctttttgcggtctgggcttgctgttc 67
          |||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40




>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
          (Japanese medaka)
          Length = 91

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 41 tctttttgcggtctgggcttgctgttc 67
          |||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40




>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
          rubripes
          Length = 87

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 tctttttgcggtctgggcttgctgt 65
          |||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 83  ggaagcccttaccccaaaaagcat 106
           ||||||||||||||||||||||||
Sbjct: 52  ggaagcccttaccccaaaaagcat 75




>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
          (Japanese medaka)
          Length = 88

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 tctttttgcggtctgggcttgctgt 65
          |||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 83  ggaagcccttaccccaaaaagcat 106
           ||||||||||||||||||||||||
Sbjct: 53  ggaagcccttaccccaaaaagcat 76




>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
          rock hyrax)
          Length = 77

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 44 ttttgcggtctgggcttgctgttcataa 71
          |||||||||||||||||||||| |||||
Sbjct: 16 ttttgcggtctgggcttgctgtacataa 43




>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
           aculeatus (three-spined stickleback)
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 83  ggaagcccttaccccaaaaagcat 106
           ||||||||||||||||||||||||
Sbjct: 53  ggaagcccttaccccaaaaagcat 76




>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
           (green anole)
          Length = 95

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  aagcccttaccccaaaaagcat 106
           ||||||||||||||||||||||
Sbjct: 62  aagcccttaccccaaaaagcat 83