miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 127 bits (64), Expect = 3e-29
Identities = 81/84 (96%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 12 gcggggtgaggtagtaggttgtgtggtttca-gggcagtgatgttgccccctcggaagat 70
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 1 gcggggtgaggtagtaggttgtgtggtttcaggggcagtgatgttg-cccctcagaagat 59
Query: 71 aactatacaacctactgccttccc 94
||||||||||||||||||||||||
Sbjct: 60 aactatacaacctactgccttccc 83
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 105 bits (53), Expect = 1e-22
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 13 cggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgccccctcggaagataa 72
|||||||||||||||||||||||||||||||||||| | ||| | |||||| | ||||||
Sbjct: 2 cggggtgaggtagtaggttgtgtggtttcagggcagcggtgtcg-cccctcagcagataa 60
Query: 73 ctatacaacctactgccttccccga 97
||||||| |||||||||||||||||
Sbjct: 61 ctatacagcctactgccttccccga 85
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 103 bits (52), Expect = 5e-22
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 12 gcggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-ctcggaagat 70
||||| |||||||||||||||||||||||||||| |||||| ||||||| || ||||||
Sbjct: 1 gcgggatgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagat 60
Query: 71 aactatacaacctactgccttccc 94
||||||||| ||||||||||||||
Sbjct: 61 aactatacagcctactgccttccc 84
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 103 bits (52), Expect = 5e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 15 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgccccctcggaagataact 74
||||||||||||||||||||||||||| ||| |||||| |||||| || ||||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcggggtagtgattttgcccgatcagaagataact 63
Query: 75 atacaacctactgccttccc 94
||||||| ||||||||||||
Sbjct: 64 atacaacatactgccttccc 83
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 93.7 bits (47), Expect = 5e-19
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-ctcggaagataact 74
|||||||||||||||||||||||||||||| ||| || ||||||| || | ||||||||
Sbjct: 5 ggtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataact 64
Query: 75 atacaacctactgccttcc 93
|||||||||||||||||||
Sbjct: 65 atacaacctactgccttcc 83
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 93.7 bits (47), Expect = 5e-19
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 17 gtgaggtagtaggttgtgtggtttcagggcagtgatgtt-gccccctcggaagataacta 75
||||||||||||||||||| ||||||||| |||||| || ||||| || | |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 76 tacaacctactgccttccc 94
|||||||||||||||||||
Sbjct: 66 tacaacctactgccttccc 84
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 87.7 bits (44), Expect = 3e-17
Identities = 73/80 (91%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 12 gcggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgccccctcggaagata 71
|||||||||||||||||||| |||||||||||||||||||||||| |||||| | | |||
Sbjct: 1 gcggggtgaggtagtaggtt-tgtggtttcagggcagtgatgttg-cccctcagcaaata 58
Query: 72 actatacaacctactgcctt 91
|||| |||||||||| ||||
Sbjct: 59 actacacaacctacttcctt 78
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 15 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgccccctcggaagataact 74
||||||||||||||||||||||||||||||| ||||| || |||| | | || |||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggttgtgattttaccccataaggagctaact 63
Query: 75 atacaacctactgccttccc 94
||||||||||||||||||||
Sbjct: 64 atacaacctactgccttccc 83
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 50.1 bits (25), Expect = 6e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 19 gaggtagtaggttgtgtggtttcagggcagtgatgttgccccctcggaagataactatac 78
|||||||||||||| | |||| ||||||| ||| ||||||| ||| |||||||||||
Sbjct: 8 gaggtagtaggttgcatagtttgagggcagggattttgccccaaagga-gataactatac 66
Query: 79 aacctactgcctt 91
||||| |||||||
Sbjct: 67 aacctgctgcctt 79
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 agataactatacaacctactgccttcc 93
||||||||||||||| |||||||||||
Sbjct: 58 agataactatacaacttactgccttcc 84
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 ggaagataactatacaacctactgccttccc 94
||||||||||||||||| ||| |||||||||
Sbjct: 54 ggaagataactatacaatctattgccttccc 84
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 agataactatacaacctactgccttcc 93
||||||||||||||| |||||||||||
Sbjct: 61 agataactatacaacttactgccttcc 87
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gaagataactatacaacctact 86
||||||||||||||||||||||
Sbjct: 57 gaagataactatacaacctact 78
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gaagataactatacaacctact 86
||||||||||||||||||||||
Sbjct: 57 gaagataactatacaacctact 78
