miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 33 aaagatgtctaaaatttgtttaaatttagatgtatctagaca 74
|||||||||| || ||||| |||||||||||||||||||||
Sbjct: 23 aaagatgtctcaactttgtcaaaatttagatgtatctagaca 64
>RF00906;MIR1122;EF059989.1/67769-67635 29664:Brachypodium
sylvaticum
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 36 gatgtctaaaatttgtttaaatttagatgtatctagacactaaa 79
||||||| ||| ||| |||||||| ||||||||||||||||||
Sbjct: 26 gatgtctgaaaattgcttaaatttgaatgtatctagacactaaa 69
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 15 tactccctccgtctcatgaaagatgtctaaaatttgtttaaatttagatgtatctagaca 74
||||||||||||| || |||||||||| |||||||| |||||| ||| |||||||||
Sbjct: 5 tactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggataaatctagaca 64
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 15 tactccctccgtctcatgaaagatgtctaaaatttgtttaaatttagatgtatctagaca 74
||||||||||||| | || ||||| | |||||||| |||| || ||||||||||||||
Sbjct: 132 tactccctccgtcccgaaaaggatgtatcaaatttgtctaaacttggatgtatctagaca 73
Query: 75 cta 77
|||
Sbjct: 72 cta 70
>RF00906;MIR1122;EU730901.1/71726-71862 15368:Brachypodium
distachyon
Length = 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 13 tatactccctccgtctcatgaaagatgtctaaaatttgtttaaatttagatgtatctaga 72
|||||||||||||||| | || ||||||| || ||||| ||| || ||||||||||||
Sbjct: 3 tatactccctccgtctaacaaaggatgtctcaagtttgtcaaaaattggatgtatctaga 62
Query: 73 ca 74
||
Sbjct: 63 ca 64
