miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;ABGA01289534.1/9899-10179 9601:Pongo abelii
(Sumatran orangutan)
Length = 281
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggag 90
|||||| ||||||| |||||||||||||||||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcacttgggag 43
>RF00017;Metazoa_SRP;AC195521.2/80928-80646 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggag 90
|||||| ||||||| |||||||||||||||||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcacttgggag 43
>RF00017;Metazoa_SRP;ABGA01349066.1/1588-1887 9601:Pongo abelii
(Sumatran orangutan)
Length = 300
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcactt 85
|||||||||||||| ||||||||||||||
Sbjct: 10 ggtggcgcacgcctgtaatcccagcactt 38
>RF00017;Metazoa_SRP;AANU01110881.1/5971-5684 9544:Macaca mulatta
(rhesus monkey)
Length = 288
Score = 50.1 bits (25), Expect = 8e-06
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagc-acttgggagtcagaggcag 100
|||||||||||||| |||||||||| ||||||||| | |||||||
Sbjct: 10 ggtggcgcacgcctgtaatcccagctacttgggaggctgaggcag 54
>RF00177;SSU_rRNA_bacteria;AJ633949.1/1-1394 91750:uncultured alpha
proteobacterium
Length = 1394
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 agcttggtaccgagctcggatcc 26
|||||||||||||||||||||||
Sbjct: 1355 agcttggtaccgagctcggatcc 1333
>RF00177;SSU_rRNA_bacteria;AB294932.1/1-1478 86473:uncultured gamma
proteobacterium
Length = 1478
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 agcttggtaccgagctcggatcc 26
|||||||||||||||||||||||
Sbjct: 1434 agcttggtaccgagctcggatcc 1412
>RF01959;SSU_rRNA_archaea;AJ132639.1/1-1264 87989:methanogenic
endosymbiont of Nyctotherus ovalis
Length = 1264
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 agcttggtaccgagctcggatcc 26
|||||||||||||||||||||||
Sbjct: 906 agcttggtaccgagctcggatcc 884
>RF00017;Metazoa_SRP;ABGA01300331.1/1695-1412 9601:Pongo abelii
(Sumatran orangutan)
Length = 284
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;ABGA01088102.1/1900-1607 9601:Pongo abelii
(Sumatran orangutan)
Length = 294
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcact-tgggagtcagaggcagctggat 106
|||||| ||||||| ||||||||||||| |||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactctgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;AACZ02178435.1/37297-37014 9598:Pan troglodytes
(chimpanzee)
Length = 284
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;AACZ02177801.1/22046-21749 9598:Pan troglodytes
(chimpanzee)
Length = 298
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;AADA01003203.1/9383-9681 9598:Pan troglodytes
(chimpanzee)
Length = 299
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;AADB02020364.1/19745-19464 9606:Homo sapiens
(human)
Length = 282
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;ABSL01053133.1/51364-51063 9606:Homo sapiens
(human)
Length = 302
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggat 60
>RF00017;Metazoa_SRP;AADC01128162.1/346-65 9606:Homo sapiens (human)
Length = 282
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
|||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 175 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 225
>RF00017;Metazoa_SRP;AANU01238130.1/1369-1652 9544:Macaca mulatta
(rhesus monkey)
Length = 284
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 58 gtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggatt 107
||||| ||||||| |||||||||||| ||||| | | ||||||||||||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttggggggctgaggcagctggatt 61
>RF00017;Metazoa_SRP;AANU01278718.1/6535-6812 9544:Macaca mulatta
(rhesus monkey)
Length = 278
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 58 gtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggatt 107
||||| ||||||| |||||||||||| ||||||| | ||||||| ||||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatt 61
>RF00017;Metazoa_SRP;ABGA01131452.1/21002-21284 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 56 gggtggcgcacgcctttaatcccagcactt 85
||||||| ||||||| ||||||||||||||
Sbjct: 9 gggtggctcacgcctgtaatcccagcactt 38
>RF00017;Metazoa_SRP;ABGA01284229.1/7715-7434 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 44.1 bits (22), Expect = 5e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 58 gtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggat 60
>RF00017;Metazoa_SRP;AADA01250173.1/1927-1647 9598:Pan troglodytes
(chimpanzee)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggag 90
|||||| ||||||| |||||||||||||| ||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttggag 43
>RF00017;Metazoa_SRP;AADA01082877.1/12416-12136 9598:Pan
troglodytes (chimpanzee)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggag 90
|||||| ||| ||| |||||||||||||||||||
Sbjct: 10 ggtggctcacacctgtaatcccagcacttgggag 43
>RF00017;Metazoa_SRP;AADA01298945.1/4281-4568 9598:Pan troglodytes
(chimpanzee)
Length = 288
Score = 44.1 bits (22), Expect = 5e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcac-ttgggagtcagagg 97
|||||| ||||||| |||||||||||| ||||||| ||||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttgggaggcagagg 51
>RF00017;Metazoa_SRP;AADB02018502.1/111428-111708 9606:Homo sapiens
(human)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 58 gtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;AADB02001004.1/28119-27839 9606:Homo sapiens
(human)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggagtcagaggcagctggat 106
|||||| || |||| |||||||||||| |||||| | ||||||| |||||
Sbjct: 10 ggtggctcatgcctgtaatcccagcacctgggaggccgaggcaggtggat 59
>RF00017;Metazoa_SRP;ABBA01037400.1/76203-75924 9606:Homo sapiens
(human)
Length = 280
Score = 44.1 bits (22), Expect = 5e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 58 gtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggat 60
>RF00017;Metazoa_SRP;AK057594.1/1557-1837 9606:Homo sapiens (human)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 58 gtggcgcacgcctttaatcccagcac-ttgggagtcagaggcagctggat 106
||||| ||||||| |||||||||||| ||||||| | ||||||| |||||
Sbjct: 11 gtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggat 60
>RF00017;Metazoa_SRP;AADB02008084.1/44190-43904 9606:Homo sapiens
(human)
Length = 287
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagca 82
|||||| |||||||||||||||||||
Sbjct: 10 ggtggctcacgcctttaatcccagca 35
>RF00017;Metazoa_SRP;CABD01157239.1/4943-5223 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggag 90
|||||| ||||||| |||||||||||||| ||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcactttggag 43
>RF00017;Metazoa_SRP;AC191846.5/15589-15289 9544:Macaca mulatta
(rhesus monkey)
Length = 301
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 ggtggcgcacgcctttaatcccagcacttgggag 90
|||||| ||||||| |||||||||||| ||||||
Sbjct: 10 ggtggctcacgcctgtaatcccagcacctgggag 43
