miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 87.7 bits (44), Expect = 6e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 18 ggagtggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagct 77
|||||||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66
Query: 78 atgaattccaca 89
||| || |||||
Sbjct: 67 atggatcccaca 78
Score = 69.9 bits (35), Expect = 1e-11
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 117 gataggcttgtggcttgcatacctcaggagctgcattacc-tgagttgcatcatgttttg 175
||||||||||||||||||||| |||||||||| ||||||| || || ||| | ||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattaccttgtattagatccttgtttg 165
Query: 176 gattgaagggagctctaca 194
|||||||||||||||||||
Sbjct: 166 gattgaagggagctctaca 184
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 83.8 bits (42), Expect = 9e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 24 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 83
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 84 tccaca 89
||||||
Sbjct: 73 tccaca 78
Score = 63.9 bits (32), Expect = 8e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 119 taggcttgtggcttgcatacctcaggagctgcatta-cctgagttgcatcatgttttgga 177
|||||||| || ||||||| |||||||||||||||| ||| || | ||| | ||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagcttaatccttgtttgga 167
Query: 178 ttgaagggagctctacacct 197
||||||||||||||||||||
Sbjct: 168 ttgaagggagctctacacct 187
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 24 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 83
|||||||||||||||||||||||| | |||| ||| ||| |||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 84 tccaca 89
|||||
Sbjct: 61 cccaca 66
Score = 50.1 bits (25), Expect = 1e-05
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 128 ggcttgcatacctcaggagctgcattacctga-gttgcatcatgttttggattgaaggga 186
|||||||||| |||||||||| ||||||| | ||| ||| | ||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 160
Query: 187 gctct 191
|||||
Sbjct: 161 gctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 75.8 bits (38), Expect = 2e-13
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 117 gataggcttgtggcttgcatacctcaggagctgcattacctgag-ttgcatcatgttttg 175
||||||||||||||||||||| |||||||||||||||| | || || ||| | ||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgtttg 165
Query: 176 gattgaagggagctctacacct 197
||||||||||||||||||||||
Sbjct: 166 gattgaagggagctctacacct 187
Score = 69.9 bits (35), Expect = 1e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 12 ggttatggagtggagctccttgaagtccaatagaagatgttgctaggttgattgagctgc 71
|||| ||||||||||||||||||||||||||||| | | || || ||| |||||||||||
Sbjct: 1 ggttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgc 60
Query: 72 tga 74
|||
Sbjct: 61 tga 63
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 69.9 bits (35), Expect = 1e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 18 ggagtggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagct 77
|||||||||||||||||||||||||||| | | ||||| ||| |||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 78 atg 80
|||
Sbjct: 67 atg 69
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 ttttggattgaagggagctcta 192
||||||||||||||||||||||
Sbjct: 153 ttttggattgaagggagctcta 174
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 60.0 bits (30), Expect = 1e-08
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 18 ggagtggagctccttgaagtccaatagaagatgttgctaggtt-gattgagctgctgagc 76
|||||||||||||||||||||||| ||||||| | | ||||| |||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacc 65
Query: 77 tatgaattcc 86
|||| |||||
Sbjct: 66 tatggattcc 75
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 165 atcatgttttggattgaagggagctctaca 194
||||| ||||||||||||||||||||||||
Sbjct: 161 atcattttttggattgaagggagctctaca 190
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 173 ttggattgaagggagctctacacct 197
|||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacct 183
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 117 gataggcttgtggcttgcatacctcaggagctgcat 152
||||||||| |||||||||| || ||||||||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcat 222
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 172 tttggattgaagggagctctaca 194
|||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctaca 194
