miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00780;MIR477;ABEU01011353.1/22038-21912 145481:Physcomitrella
patens subsp. patens
Length = 127
Score = 244 bits (123), Expect = 2e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 gtttgtttttctccctcaaaggcttccaacaacaggagggtacaattccattgtggttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtttgtttttctccctcaaaggcttccaacaacaggagggtacaattccattgtggttat 62
Query: 61 aacccatagttgaggtgtttttgctctctctgctgtcggaagccttcgagggagatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aacccatagttgaggtgtttttgctctctctgctgtcggaagccttcgagggagatgaaa 122
Query: 121 gaa 123
|||
Sbjct: 123 gaa 125
>RF00780;MIR477;ABEU01012303.1/7387-7514 145481:Physcomitrella
patens subsp. patens
Length = 128
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 gtttttctccctcaaaggcttccaacaacag 35
|||||||||||||||||||||||||||||||
Sbjct: 7 gtttttctccctcaaaggcttccaacaacag 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 89 tctgctgtcggaagccttcgagggagatgaaagaa 123
|||||||| ||||||||||| |||||| |||||||
Sbjct: 92 tctgctgttggaagccttcgtgggagacgaaagaa 126
>RF00778;MIR473;ABEU01009332.1/18900-19015 145481:Physcomitrella
patens subsp. patens
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 tctccctcaaaggcttccaacaacagg 36
|||||||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaacaacagg 39
>RF00778;MIR473;ABEU01001451.1/57637-57555 145481:Physcomitrella
patens subsp. patens
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tctccctcaaaggcttccaacaacagg 36
|||||||||||||||||||||| ||||
Sbjct: 13 tctccctcaaaggcttccaacatcagg 39
>RF00780;MIR477;AASG02000511.1/21598-21512 3988:Ricinus communis
(castor bean)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tctccctcaaaggcttccaaca 31
||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaaca 33
>RF00778;MIR473;ABEU01011565.1/20254-20339 145481:Physcomitrella
patens subsp. patens
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tctccctcaaaggcttccaaca 31
||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaaca 34
