miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 102 ctgttgtggctccactcatgcactgcctcttccctggctt 141
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggctt 106
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 103 tgttgtggctccactcatgcactgcctcttccctggc 139
||||||||||| |||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 102 ctgttgtggctccactcatgcactgcctcttccctggct 140
||||||||||| | |||||||||||||||||||||||||
Sbjct: 101 ctgttgtggctacgctcatgcactgcctcttccctggct 139
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 58.0 bits (29), Expect = 5e-08
Identities = 77/92 (83%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 51 aagacagggacgaggtagagcatggatggagttcccaacagaaca--gtcaagctgttgt 108
||||| |||||||||||| ||||||||||| | ||||||| | || |||||||| |
Sbjct: 17 aagacggggacgaggtagtgcatggatggaactattaacagaagaatgttaagctgtttt 76
Query: 109 ggctccactcatgcactgcctcttccctggct 140
|||| || |||||||||||||||||||||||
Sbjct: 77 tgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 103 tgttgtggctccactcatgcactgcctcttccctggctt 141
|||| |||||| || ||||||||||||||||||||||||
Sbjct: 64 tgttttggctctacccatgcactgcctcttccctggctt 102
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 102 ctgttgtggctccactcatgcactgcctcttccctggctt 141
||||| |||||| || | ||||||||||||||||||||||
Sbjct: 64 ctgttttggctctacccctgcactgcctcttccctggctt 103
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 catgcactgcctcttccctggct 140
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
