miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00701;mir-126;EU221177.1/65651-65724 8030:Salmo salar (Atlantic
salmon)
Length = 74
Score = 109 bits (55), Expect = 8e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 30 tcattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaataatgc 89
||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 8 tcattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgc 67
Query: 90 actgtgg 96
|||||||
Sbjct: 68 actgtgg 74
>RF00701;mir-126;BAAE01255215.1/350-278 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 77.8 bits (39), Expect = 3e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 31 cattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaataatgca 90
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctatgccactctcaa-ctcgtaccgtgagtaataatgca 67
Query: 91 ctg 93
|||
Sbjct: 68 ctg 70
>RF00701;mir-126;AAPN01325297.1/2349-2421 9258:Ornithorhynchus
anatinus (platypus)
Length = 73
Score = 61.9 bits (31), Expect = 2e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 31 cattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaataatgc 89
||||||||||||||||||||||| | | || |||| ||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgac-gcttcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAWZ01045019.1/473-401 28377:Anolis carolinensis
(green anole)
Length = 73
Score = 61.9 bits (31), Expect = 2e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 31 cattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaataatgc 89
||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgcc-acttcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAVX01058805.1/2145-2073 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 61.9 bits (31), Expect = 2e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 26 cagctcattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaata 85
|||| ||||||||||||||||||||||| | | | |||| ||||||||||||||||||
Sbjct: 4 cagcccattattacttttggtacgcgctgtgaca-cttcaaactcgtaccgtgagtaata 62
Query: 86 atgcactgtgg 96
|||||| ||||
Sbjct: 63 atgcacagtgg 73
>RF00701;mir-126;AAFR03005634.1/12031-12103 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 56.0 bits (28), Expect = 1e-07
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 30 tcattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaataatgc 89
|||||||||||||||||||||||| | | | |||| ||||||||||||||||||||||
Sbjct: 8 tcattattacttttggtacgcgctgtgac-acatcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;ABRQ01610658.1/2102-2030 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 54.0 bits (27), Expect = 4e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 31 cattattacttttggtacgcgctaggcctgcctcaagctcgtaccgtgagtaataatgc 89
||||||||||||||||||||||| | | | |||| ||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgac-acgtcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAQR01724391.1/772-699 30611:Otolemur garnettii
(small-eared galago)
Length = 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 cattattacttttggtacgcgct 53
|||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgct 31
