miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00420;SNORA61;AAFC03094460.1/938-1063 9913:Bos taurus (cattle)
Length = 126
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 aggaatagtagtactgaaactgggctcgtagtgtgtgctgtatagcatgtgggctagttt 60
|||||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||
Sbjct: 58 aggaatagcagtactgaaactgtgctcgtggtgtgtgctgtacagcatgtgggctagttt 117
Query: 61 cagacaagg 69
| |||||||
Sbjct: 118 cggacaagg 126
>RF00420;SNORA61;ABRN01389020.1/645-770 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 126
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 aggaatagtagtactgaaactgggctcgtagtgtgtgctgtatagcatgtgggctagttt 60
|||||||||||| ||||| ||| |||| |||||| |||| ||||||||||||||||||||
Sbjct: 58 aggaatagtagtcctgaagctgtgctcatagtgtctgctatatagcatgtgggctagttt 117
Query: 61 cagacaagg 69
| ||||||
Sbjct: 118 aaaacaagg 126
>RF00420;SNORA61;AAFC03084772.1/83400-83505 9913:Bos taurus
(cattle)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 29 tagtgtgtgctgtatagcatgtgggctagtttca 62
|||||| ||||||| |||||||||||||||||||
Sbjct: 66 tagtgtctgctgtagagcatgtgggctagtttca 99
>RF00420;SNORA61;AAKN02013046.1/106886-107031 10141:Cavia porcellus
(domestic guinea pig)
Length = 146
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tatagcatgtgggctagtttcagaca 66
||||||||||||||||||||||||||
Sbjct: 118 tatagcatgtgggctagtttcagaca 143
>RF00420;SNORA61;AAFC03120936.1/60471-60349 9913:Bos taurus (cattle)
Length = 123
Score = 46.1 bits (23), Expect = 6e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 11 gtactgaaactgggctcgtagtgtgtgctgtatagcatgtgggctagtttcagacaagg 69
|||||||| ||| ||| |||| | |||||||||||||| |||||| ||||| ||||||
Sbjct: 65 gtactgaagctgtgcttatagtatctgctgtatagcatgggggctactttcaaacaagg 123
>RF00420;SNORA61;AAWR02028293.1/8900-9032 9796:Equus caballus
(horse)
Length = 133
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 agcatgtgggctagtttcagacaagg 69
||||||||||||||||||| ||||||
Sbjct: 108 agcatgtgggctagtttcacacaagg 133
>RF00420;SNORA61;ABRN01255220.1/10187-10061 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 127
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 agcatgtgggctagtttcagacaagg 69
||||||||||||||||||| ||||||
Sbjct: 102 agcatgtgggctagtttcaaacaagg 127
>RF00420;SNORA61;AANU01100853.1/8026-7897 9544:Macaca mulatta
(rhesus monkey)
Length = 130
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 gcatgtgggctagtttcagaca 66
||||||||||||||||||||||
Sbjct: 106 gcatgtgggctagtttcagaca 127
>RF00420;SNORA61;AACN010799948.1/292-160 9615:Canis lupus familiaris
(dog)
Length = 133
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tatagcatgtgggctagtttcagacaagg 69
|||||| ||||||||||||||| ||||||
Sbjct: 105 tatagcttgtgggctagtttcaaacaagg 133
>RF00420;SNORA61;ABDC01591165.1/1532-1438 30608:Microcebus murinus
(gray mouse lemur)
Length = 95
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tatagcatgtgggctagtttcagacaagg 69
||||||| |||||||||||||| ||||||
Sbjct: 67 tatagcacgtgggctagtttcaaacaagg 95
>RF00420;SNORA61;ABDC01209906.1/279-398 30608:Microcebus murinus
(gray mouse lemur)
Length = 120
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tatagcatgtgggctagtttcagacaagg 69
||||||||||||| |||||||| ||||||
Sbjct: 92 tatagcatgtgggatagtttcaaacaagg 120
>RF00420;SNORA61;ABDC01313475.1/1292-1380 30608:Microcebus murinus
(gray mouse lemur)
Length = 89
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 tatagcatgtgggctagtttcagacaagg 69
||||||||||| |||||||||| ||||||
Sbjct: 61 tatagcatgtgagctagtttcaaacaagg 89
