miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 18 ctcgctgttcctttttcctatgcatataccgctttgagatctagctttaaagaggcatag 77
||||||||||||||||||||||||||||| |||||| || || |||||||||||||||
Sbjct: 1 ctcgctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataa 60
Query: 78 ggcatgggaaaatggggctgcagaggt 104
|||||||||||||||||||||||||||
Sbjct: 61 ggcatgggaaaatggggctgcagaggt 87
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 83.8 bits (42), Expect = 5e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 18 ctcgctgttcctttttcctatgcatataccgctttgagatctagctttaaagaggcatag 77
|||| |||||||||||||||||||||||| |||||||| | | | |||||||||||||
Sbjct: 1 ctcgttgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatag 60
Query: 78 ggcatgggaaaatggggc 95
|||||||||||||||||
Sbjct: 61 agcatgggaaaatggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 18 ctcgctgttcctttttcctatgcatataccgctttgagatctagctttaaagaggcatag 77
|||||||||||||||||||||||||||||| |||||| | | | ||||| |||||||
Sbjct: 1 ctcgctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatag 60
Query: 78 ggcatgggaaaatgg 92
|||||||||||||||
Sbjct: 61 ggcatgggaaaatgg 75
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 24 gttcctttttcctatgcatataccgctttgagatctagctttaaagaggcatagggcatg 83
||||||||||||||||||||||| |||||||| | | ||||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 84 ggaaaatggggc 95
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 71.9 bits (36), Expect = 2e-12
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 18 ctcgctgttcctttttcctatgcatataccgctttga-gatctagctttaaagaggcata 76
||||||||||||||||||||||||||||| |||||| ||||| || |||||||| |||
Sbjct: 1 ctcgctgttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtata 59
Query: 77 gggcatgggaaaatgg 92
|||||||||||||||
Sbjct: 60 tggcatgggaaaatgg 75
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 67.9 bits (34), Expect = 3e-11
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 24 gttcctttttcctatgcatataccgctttga-gatctagctttaaagaggcatagggcat 82
||||||||||||||||||||||| |||||| ||||| || |||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatagggcat 65
Query: 83 gggaaaatgg 92
||||||||||
Sbjct: 66 gggaaaatgg 75
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 65.9 bits (33), Expect = 1e-10
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 24 gttcctttttcctatgcatataccgctttg-agatctagctttaaagaggcatagggcat 82
||||||||||||||||||||||| ||||| |||||| || |||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaagatctggc-ctaaagaggtatagggcat 65
Query: 83 gggaaaatggggc 95
||||||| |||||
Sbjct: 66 gggaaaacggggc 78
