miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 113 bits (57), Expect = 4e-25
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctagaaagatgccaacactctaagccaccatctgaaac 69
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 69 agaacactgatttcaaatggtgctagatagatgacagcactctaagccaccatctgaaac 10
Query: 70 cagcttcca 78
|||||||||
Sbjct: 9 cagcttcca 1
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 71 agaacactgatttcaaatggtgctaga 45
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 71 agaacactgatttcaaatggtgctaga 45
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 72 agaacactgatttcaaatggtgctaga 46
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 71 agaacactgatttcaaatggtgctaga 45
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 71 agaacactgatttcaaatggtgctaga 45
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 71 agaacactgatttcaaatggtgctaga 45
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 72 agaacactgatttcaaatggtgctaga 46
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||||
Sbjct: 70 agaacactgatttcaaatggtgctaga 44
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 11 gaacactgatttcaaatggtgctaga 36
||||||||||||||||||||||||||
Sbjct: 68 gaacactgatttcaaatggtgctaga 43
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 12 aacactgatttcaaatggtgctaga 36
|||||||||||||||||||||||||
Sbjct: 70 aacactgatttcaaatggtgctaga 46
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 46 acactctaagccaccatctgaaaccagcttcc 77
|||||||||| |||||||||||||||| ||||
Sbjct: 33 acactctaagacaccatctgaaaccagtttcc 2
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 18 gatttcaaatggtgctagaaaga 40
|||||||||||||||||||||||
Sbjct: 58 gatttcaaatggtgctagaaaga 36
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 10 agaacactgatttcaaatggtgctaga 36
||||||| |||||||||||||||||||
Sbjct: 69 agaacaccgatttcaaatggtgctaga 43
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gaacactgatttcaaatggtgctaga 36
|||||||||||||| |||||||||||
Sbjct: 70 gaacactgatttcatatggtgctaga 45
