miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ccccctgcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ccccctgcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtct 69
Query: 61 gcacattggttaggctgggc 80
||||||||||||||||||||
Sbjct: 70 gcacattggttaggctgggc 89
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 123 bits (62), Expect = 3e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacat 66
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacat 75
Query: 67 tggttaggct 76
||||||||||
Sbjct: 76 tggttaggct 85
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 119 bits (60), Expect = 5e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 4 cctgcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgca 63
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 13 cctgcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgca 72
Query: 64 cattggttaggctggg 79
||||||||| ||||||
Sbjct: 73 cattggttaagctggg 88
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 115 bits (58), Expect = 9e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacat 66
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 74
Query: 67 tggttaggctgggc 80
||||||||||||||
Sbjct: 75 tggttaggctgggc 88
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 115 bits (58), Expect = 9e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacat 66
|||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcctccagctacaactgaacagtagtctgcacat 75
Query: 67 tggttaggct 76
||||||||||
Sbjct: 76 tggttaggct 85
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 11 gcccagtgttcagactacctgttcatccggctac--agctgaacagtagtctgcacattg 68
||||||||||||||||||||||||| |||| | | || ||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcagggggctccgaatgtgtacagtagtctgcacattg 79
Query: 69 gttaggctgggc 80
||||||||||||
Sbjct: 80 gttaggctgggc 91
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 11 gcccagtgttcagactacctgttcatccggcta--cagctgaacagtagtctgcacattg 68
||||||||||||||||||||||||| || || || || ||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggcgcctctgcatgtgtacagtagtctgcacattg 79
Query: 69 gttaggctgggc 80
||||||||||||
Sbjct: 80 gttaggctgggc 91
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/76 (86%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttcatccggctaca--gctgaacagtagtctgcac 64
|||| |||||||||||||||||||||||| |||||| | || ||||||||||||||
Sbjct: 16 gccttcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcac 75
Query: 65 attggttaggctgggc 80
||||||||| ||||||
Sbjct: 76 attggttagactgggc 91
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 71
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 71
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggtgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 71
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 61.9 bits (31), Expect = 1e-09
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggcta-cagc-tgaacagtagtctgcacattgg 69
|||||||||||||||||||||||| |||| || | || |||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattgg 80
Query: 70 ttaggctgggc 80
|||||||||||
Sbjct: 81 ttaggctgggc 91
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 63/72 (87%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggct---acagctgaacagtagtctgcacattg 68
|||||||||||||||||||||||| |||| ||| || ||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggaca--tgtacagtagtctgcacattg 78
Query: 69 gttaggctgggc 80
||||||||||||
Sbjct: 79 gttaggctgggc 90
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggc 91
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggc 91
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggctgggc 90
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggctac-agctgaacagtagtctgcacattggt 70
|||||||||||||||||||||||| ||||| | || ||||||||||||||| ||||
Sbjct: 21 cccagtgttcagactacctgttcaggcggctgtgatgtgtacagtagtctgcacactggt 80
Query: 71 taggctggg 79
|||||||||
Sbjct: 81 taggctggg 89
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttca 35
|||||||||||||||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttca 43
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgg 78
||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttca 35
|||||||||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttca 44
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgg 78
||||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctgg 87
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttca 35
|||||||||||||||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttca 43
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgg 78
||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttca 35
|||||||||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttca 44
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgg 78
||||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctgg 87
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 9 ctgcccagtgttcagactacctgttcatccggctac-ag-ctgaacagtagtctgcacat 66
||||||||||||||||||||||||||| | |||| || || ||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca--ggactacgagattgtacagtagtctgcacat 74
Query: 67 tggttaggctg 77
|||||||||||
Sbjct: 75 tggttaggctg 85
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctg 77
|||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctg 86
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||| ||||||||||||||||||||
Sbjct: 57 acagtagtcagcacattggttaggctgggc 86
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||| ||||||
Sbjct: 60 acagtagtctgcacattggttagactgggc 89
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 71
|||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactggtgtacagtagtctgcacattggtt 80
Query: 72 ag 73
||
Sbjct: 81 ag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 71
|||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 80
Query: 72 ag 73
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggc 75
|||||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggc 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttca 35
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gcccagtgttcagactacctgttca 35
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttag 73
|||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttca 35
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttag 73
|||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttag 82
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gcccagtgttcagactacctgtt 33
|||||||||||||||||||||||
Sbjct: 19 gcccagtgttcagactacctgtt 41
