miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 139 bits (70), Expect = 8e-33
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 12 gccccggacaggatatcatcttatactgtaagtttattaaagagacactacagtatagat 71
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 gccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagat 64
Query: 72 gatgtactatccagggtctcat 93
||||||||||||||||| ||||
Sbjct: 65 gatgtactatccagggtttcat 86
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 107 bits (54), Expect = 3e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 18 gacaggatatcatcttatactgtaagtttattaaagagacactacagtatagatgatgta 77
|||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgta 70
Query: 78 ctatccaggg 87
||||||||||
Sbjct: 71 ctatccaggg 80
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 75.8 bits (38), Expect = 9e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 gtgccccggacaggatatcatcttatactgtaagtttattaaagagacactacagtatag 69
|||||| || |||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 3 gtgccctggccaggatatcatcgtatactgtaagtttgc-aatgagacactacagtatag 61
Query: 70 atgatgtact 79
||||||||||
Sbjct: 62 atgatgtact 71
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 69.9 bits (35), Expect = 6e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 22 ggatatcatcttatactgtaagtttattaaagagacactacagtatagatgatgtacta 80
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgat-gagacactacagtatagatgatgtacta 72
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 22 ggatatcatcttatactgtaagtttattaaagagacactacagtatagatgatgtact 79
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgc-aatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 14 cccggacaggatatcatcttatactgtaagtttattaaagagacactacagtatagatga 73
||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 7 cccgggcaggatatcatcgtatactgtaagttggctat-gagacactacagtatagatga 65
Query: 74 tgtact 79
||||||
Sbjct: 66 tgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 22 ggatatcatcttatactgtaagtttattaaagagacactacagtatagatgatgtact 79
|||||||||| ||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagttcactat-gagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 agacactacagtatagatgatgtacta 80
|||||||||||||||||||||||||||
Sbjct: 47 agacactacagtatagatgatgtacta 73
