miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 19 gacagaatatcatcttatactgtaagttta-tcaacagacactacagtatagatgatgta 77
||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgta 70
Query: 78 ctaatcagggtctcat 93
||| |||||| ||||
Sbjct: 71 ctatccagggtttcat 86
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 25 atatcatcttatactgtaagtttatcaacagacactacagtatagatgatgtacta 80
|||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 17 atatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtacta 72
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 25 atatcatcttatactgtaagtttatcaacagacactacagtatagatgatgtact 79
|||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 17 atatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 25 atatcatcttatactgtaagtttatcaacagacactacagtatagatgatgtact 79
|||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 17 atatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 25 atatcatcttatactgtaagtttatcaacagacactacagtatagatgatgtact 79
|||||||| ||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 17 atatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 19 gacagaatatcatcttatactgtaagtttatcaac-agacactacagtatagatgatgta 77
||||| |||||||| ||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgta 70
Query: 78 cta 80
|||
Sbjct: 71 cta 73
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagacactacagtatagatgatgtacta 80
||||||||||||||||||||||||||||
Sbjct: 46 cagacactacagtatagatgatgtacta 73
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 25 atatcatcttatactgtaagtttatcaacagacactacagtatagatgatgtact 79
|||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 17 atatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 71
