miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio (zebrafish)
Length = 103
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 20 ctgtgaattctatccttcattccaccggagtctgtgtagctgtccaatcagatttcagtg 79
||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 16 ctgtgcattctatccttcattccaccggagtctgtgtagttgttcaatcagatttcagtg 75
Query: 80 gtgtgaagtgtaggagacatggaaagat 107
||||||||||||||| ||| ||||||||
Sbjct: 76 gtgtgaagtgtaggaaacacggaaagat 103
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 27 ttctatccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaa 86
|||||||||||||||||||||||||||| | | | || |||||||||||||||||||
Sbjct: 23 ttctatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaa 82
Query: 87 gtgtaggagacatgg 101
||||| |||||||||
Sbjct: 83 gtgtaagagacatgg 97
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 67.9 bits (34), Expect = 3e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 26 attctatccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtga 85
|||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct: 22 attctatccttcattccaccggagtctgtgtaaagtgccagtcagatttcagtggtttga 81
Query: 86 ag 87
||
Sbjct: 82 ag 83
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 27 ttctatccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaa 86
|||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||
Sbjct: 23 ttctatccttcattccaccggagtctgtatagagtgccactcagatttcagtggattgaa 82
Query: 87 gtgtaggagacatggaa 103
| ||| || ||||||||
Sbjct: 83 gagtaagaaacatggaa 99
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 27 ttctatccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaa 86
|||| ||||||||||||||||||||||| | | || | |||||||||||||||||||
Sbjct: 19 ttctgtccttcattccaccggagtctgtctg--tttcacaccagatttcagtggtgtgaa 76
Query: 87 gtgtaggagacatgg 101
||||| |||||||||
Sbjct: 77 gtgtaagagacatgg 91
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 27 ttctatccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaa 86
|||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 23 ttctgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaa 82
Query: 87 gtgtaggagacatgg 101
||||| ||||||||
Sbjct: 83 gtgtaaaagacatgg 97
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaagtgta 91
||||||||||||||||||||||| | | |||| ||||||||||||| ||||||| |
Sbjct: 28 tccttcattccaccggagtctgtttca-tacccaaccagatttcagtggagtgaagttca 86
Query: 92 ggagacatgga 102
|||||||||||
Sbjct: 87 ggagacatgga 97
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/56 (87%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaag 87
||||||||||||||||||||||| | ||| ||| ||||||||||||| ||||||
Sbjct: 28 tccttcattccaccggagtctgtct--ctgcacaaccagatttcagtggagtgaag 81
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 50.1 bits (25), Expect = 7e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaagt 88
||||||||||||||||||||||| | | | |||| ||||||||||||| |||||||
Sbjct: 28 tccttcattccaccggagtctgtctcg-tacccaaccagatttcagtggagtgaagt 83
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaag 87
||||||||||||||||||||||| | | || |||||||||||||||| ||||||
Sbjct: 28 tccttcattccaccggagtctgtct-catatctaatcagatttcagtggagtgaag 82
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgtgtagctgtccaatcagatttcagtggtgtgaag 87
||||||||||||||||||||||| | | || |||||||||||||||| ||||||
Sbjct: 28 tccttcattccaccggagtctgtct-catatctaatcagatttcagtggagtgaag 82
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgtg 55
||||||||||||||||||||||||
Sbjct: 27 tccttcattccaccggagtctgtg 50
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus
(house mouse)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgt 54
|||||||||||||||||||||||
Sbjct: 27 tccttcattccaccggagtctgt 49
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia
porcellus (domestic guinea pig)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgt 54
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia
guttata
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgt 54
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tccttcattccaccggagtctgt 54
|||||||||||||||||||||||
Sbjct: 27 tccttcattccaccggagtctgt 49
