miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 99.6 bits (50), Expect = 5e-21
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 1 agccaaccacaacagttcttcagctggcagctttagttggtaca-tatgacataaagctt 59
|||| ||||||||||||||||||||||||||||||| |||| || | |||||||||||
Sbjct: 88 agccgaccacaacagttcttcagctggcagctttagctggtgcacgagaacataaagctt 29
Query: 60 gccagtgaagaactgatgtgggtcag 85
||||||||||||||| ||||||||||
Sbjct: 28 gccagtgaagaactgctgtgggtcag 3
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 6 accacaacagttcttcagctggcagctttag 36
|||||||||||||||||||||||||||||||
Sbjct: 83 accacaacagttcttcagctggcagctttag 53
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 13 cagttcttcagctggcagctttagttggtacatatgacataaagcttgccagtgaagaac 72
|||||||||| ||||||||||||| ||| ||| ||||||||||| |||| ||||||||
Sbjct: 73 cagttcttcaactggcagctttagctgggacaa--gacataaagctcgccactgaagaac 16
Query: 73 tgatgtgg 80
|| |||||
Sbjct: 15 tgctgtgg 8
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 10 caacagttcttcagctggcagctttagttggtacatatgacataaagcttgccagtgaag 69
||||||||||||| ||||||||||||| ||| | | |||||||||||||||| |||||
Sbjct: 76 caacagttcttcaactggcagctttagctgggtc--aggacataaagcttgccactgaag 19
Query: 70 aact 73
||||
Sbjct: 18 aact 15
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 10 caacagttcttcagctggcagctttagttggtacatatg-acataaagcttgccagtgaa 68
||||||||||||| ||||||||||||| | || | | | ||||||||||||||| ||||
Sbjct: 79 caacagttcttcaactggcagctttagctactagagaaggacataaagcttgccactgaa 20
Query: 69 gaactg 74
||||||
Sbjct: 19 gaactg 14
>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 13 cagttcttcagctggcagctttagttggtacatatga-cataaagcttgccagtgaagaa 71
|||||||||||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 76 cagttcttcagctggcagctttagcatgtgtatagaaacataaagcttgccagtgaagaa 17
Query: 72 ctgatgtgggtcag 85
| | |||| |||||
Sbjct: 16 cagctgtgtgtcag 3
