miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 65.9 bits (33), Expect = 9e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 20 gcagttcttcactggcaagctttacgttcctgttgtactgctaaagctgccagctgaaga 79
|||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 13 gcagttcttcactggcaagctttatgttctcgtgcaccagctaaagctgccagctgaaga 72
Query: 80 actgt 84
|||||
Sbjct: 73 actgt 77
>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 23 gttcttcactggcaagctttacgttcctgttgtactgctaaagctgccagctgaagaact 82
||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 16 gttcttcactggcaagctttatgtttctatacacatgctaaagctgccagctgaagaact 75
Query: 83 g 83
|
Sbjct: 76 g 76
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 gctaaagctgccagctgaagaactgt 84
||||||||||||||||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgt 77
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gctaaagctgccagctgaagaactgt 84
|||||||||||||| |||||||||||
Sbjct: 49 gctaaagctgccagttgaagaactgt 74
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gctaaagctgccagctgaagaactgt 84
|||||||||||||| |||||||||||
Sbjct: 52 gctaaagctgccagttgaagaactgt 77
