miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00664;mir-223;AANH01000582.1/391608-391499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 77.8 bits (39), Expect = 2e-14
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 15 cccacttagtgtatttgacaagctgagctggaca--ctaaaagacagagtgtcagtttgt 72
||||||||||||||||||||||||||| |||||| || | | ||||||||||||||
Sbjct: 19 cccacttagtgtatttgacaagctgagttggacactctgtatctctgagtgtcagtttgt 78
Query: 73 caaataccccaagtgagacgtcactagtct 102
||||||||||||||||| |||||| ||||
Sbjct: 79 caaataccccaagtgaggtgtcacttgtct 108
>RF00664;mir-223;BAAF04035315.1/6268-6159 8090:Oryzias latipes
(Japanese medaka)
Length = 110
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 15 cccacttagtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgt 72
||||||||||||||||||||||||||| |||||||| | | ||||||||||||||
Sbjct: 19 cccacttagtgtatttgacaagctgagttggacactctatctctgtgagtgtcagtttgt 78
Query: 73 caaataccccaagtgag 89
|||||||||||||||||
Sbjct: 79 caaataccccaagtgag 95
>RF00664;mir-223;AAFR03059733.1/784-675 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtcgtagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtgag 89
|||||||||
Sbjct: 87 ccaagtgag 95
>RF00664;mir-223;AADN02013066.1/26830-26939 9031:Gallus gallus
(chicken)
Length = 110
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaa--gacagagtgtcagtttgtcaaatacc 80
||||||||||||||||||| | |||||| | | ||||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtgag 89
|||||||||
Sbjct: 87 ccaagtgag 95
>RF00664;mir-223;ABQF01018329.1/6784-6677 59729:Taeniopygia
guttata
Length = 108
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 57 cagagtgtcagtttgtcaaataccccaagtgag 89
|||||||||||||||||||||||||||||||||
Sbjct: 62 cagagtgtcagtttgtcaaataccccaagtgag 94
>RF00664;mir-223;AANN01684196.1/3693-3802 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacact--aaaagacagagtgtcagtttgtcaaatacc 80
||||||||||||||||||| | |||||| | | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttagacactccatatggaagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtg 87
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;AAKN02052886.1/11821-11930 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtg 87
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;CAAB01000001.1/273051-272942 31033:Takifugu
rubripes
Length = 110
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 59 gagtgtcagtttgtcaaataccccaagtgagacgtcactagtct 102
||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgaggtgtcacttgtct 108
>RF00664;mir-223;AALT01652710.1/2269-2378 42254:Sorex araneus
(European shrew)
Length = 110
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAQR01675055.1/2409-2518 30611:Otolemur garnettii
(small-eared galago)
Length = 110
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AY866256.1/405-514 9544:Macaca mulatta (rhesus
monkey)
Length = 110
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AL831708.9/47299-47408 10090:Mus musculus (house
mouse)
Length = 110
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAIY01539231.1/5018-5127 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAPN01125420.1/2697-2806 9258:Ornithorhynchus
anatinus (platypus)
Length = 110
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 gagtgtcagtttgtcaaataccccaagtgag 89
||||||||||||||||||||||| |||||||
Sbjct: 67 gagtgtcagtttgtcaaataccctaagtgag 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacact 50
||||||||||||||||||| ||||||||
Sbjct: 28 gtgtatttgacaagctgagttggacact 55
>RF00664;mir-223;BX465863.11/57630-57739 7955:Danio rerio
(zebrafish)
Length = 110
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 gtgtcagtttgtcaaataccccaag 85
|||||||||||||||||||||||||
Sbjct: 67 gtgtcagtttgtcaaataccccaag 91
>RF00664;mir-223;AAWZ01036640.1/6703-6593 28377:Anolis
carolinensis (green anole)
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 cagagtgtcagtttgtcaaata 78
||||||||||||||||||||||
Sbjct: 64 cagagtgtcagtttgtcaaata 85
