miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;CAAE01012407.1/29943-29853 99883:Tetraodon
nigroviridis
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 cagtaagtgctacttgttggggtagtttta 87
|||||||||||||||||||||||| |||||
Sbjct: 58 cagtaagtgctacttgttggggtaatttta 87
>RF01413;miR-430;CAAB01008374.1/5191-5101 31033:Takifugu rubripes
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gtaagtgctacttgttggggtagttttact 89
|||||||||||||||||||||| |||||||
Sbjct: 60 gtaagtgctacttgttggggtacttttact 89
>RF01413;miR-430;AB095090.1/531-619 13106:Lepomis macrochirus
(bluegill)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 aattcagtaagtgctacttgttggggtagt 83
||||||||||||||| ||||||||||||||
Sbjct: 52 aattcagtaagtgcttcttgttggggtagt 81
>RF01413;miR-430;AF420486.1/697-783 13106:Lepomis macrochirus
(bluegill)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 18 tattaccctaactggagcattgacttgtcttttttcaattcagtaagtgctacttgttgg 77
||||||||||||| ||||||||||||| | | || ||||||||||||| ||||||||||
Sbjct: 18 tattaccctaacttgagcattgacttgac--tgttgaattcagtaagtg-tacttgttgg 74
Query: 78 g 78
|
Sbjct: 75 g 75
>RF01413;miR-430;ACDA01001276.1/512-421 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 tttcaattcagtaagtgctacttgttgggg 79
||||||||||||||||||||| ||||||||
Sbjct: 50 tttcaattcagtaagtgctacatgttgggg 79
>RF01413;miR-430;CAAE01012407.1/27170-27080 99883:Tetraodon
nigroviridis
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 agtaagtgctacttgttggggtagtttta 87
||||||||||||||||||||||| |||||
Sbjct: 59 agtaagtgctacttgttggggtaatttta 87
>RF01413;miR-430;AANH01014757.1/4511-4602 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 tcaattcagtaagtgctacttgttggggtagtttt 86
||||| ||||||||||| ||||||||||||||||
Sbjct: 53 tcaatacagtaagtgctttttgttggggtagtttt 87
>RF01413;miR-430;AANH01014757.1/1978-2066 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 tcaattcagtaagtgctacttgttggggtagtttt 86
||||| ||||||||||| ||||||||||||||||
Sbjct: 50 tcaatacagtaagtgctttttgttggggtagtttt 84
>RF01413;miR-430;AANH01007362.1/9091-9003 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 tcaattcagtaagtgctacttgttggggtagtttt 86
||||| ||||||||||| ||||||||||||||||
Sbjct: 50 tcaatacagtaagtgctttttgttggggtagtttt 84
>RF01413;miR-430;BX088538.26/195245-195151 7955:Danio rerio
(zebrafish)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtaagtgctacttgttggggtagttt 85
|||||||||| |||||||||||||||
Sbjct: 63 gtaagtgctatttgttggggtagttt 88
>RF01413;miR-430;CAAK05031383.1/3185-3096 7955:Danio rerio
(zebrafish)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtaagtgctacttgttggggtagttt 85
|||||||||| |||||||||||||||
Sbjct: 58 gtaagtgctatttgttggggtagttt 83
>RF01413;miR-430;CAAK05053789.1/566-477 7955:Danio rerio
(zebrafish)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtaagtgctacttgttggggtagttt 85
|||||||||| |||||||||||||||
Sbjct: 58 gtaagtgctatttgttggggtagttt 83
>RF01413;miR-430;CAAB01008374.1/4796-4707 31033:Takifugu rubripes
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 gtaagtgctacttgttggggtagttt 85
|||||||||| |||||||||||||||
Sbjct: 60 gtaagtgctatttgttggggtagttt 85
