miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00100;7SK;AL611982.26/127743-128050 10090:Mus musculus (house
           mouse)
          Length = 308

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 43  aactcacagagatctgcctgcctctgcctcccgagtgctgggatta 88
           |||||||||||||||||||| || ||||| | ||||||||||||||
Sbjct: 307 aactcacagagatctgcctggctttgccttctgagtgctgggatta 262




>RF00017;Metazoa_SRP;AADA01310983.1/9423-9705 9598:Pan troglodytes
           (chimpanzee)
          Length = 283

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 35/37 (94%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                
Query: 53  gatctgcctgcctctgcctccc-gagtgctgggatta 88
           |||||||| ||||||||||||| ||||||||||||||
Sbjct: 227 gatctgcccgcctctgcctcccagagtgctgggatta 191




>RF00100;7SK;AABR04002105.1/18421-18740 10116:Rattus norvegicus
           (Norway rat)
          Length = 320

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 46  tcacagagatctgcctgcctctgcctcccgagt 78
           |||||||||||||||| ||||||||||| ||||
Sbjct: 320 tcacagagatctgccttcctctgcctcctgagt 288




>RF00100;7SK;CAAA01155083.1/245-554 10090:Mus musculus (house mouse)
          Length = 310

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 40/44 (90%), Gaps = 2/44 (4%)
 Strand = Plus / Minus

                                                       
Query: 50  agagatctgcctgc--ctctgcctcccgagtgctgggattaaag 91
           ||||||||||||||  |||||||||| ||||||| |||||||||
Sbjct: 304 agagatctgcctgcctctctgcctcctgagtgctaggattaaag 261




>RF00100;7SK;CAAA01138734.1/41922-41649 10090:Mus musculus (house
           mouse)
          Length = 274

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 61  tgcctctgcctcccgagtgctgggattaaag 91
           ||||||||||||| |||||||| ||||||||
Sbjct: 195 tgcctctgcctcctgagtgctgagattaaag 165




>RF00017;Metazoa_SRP;AADD01024744.1/29111-29392 9606:Homo sapiens
          (human)
          Length = 282

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 53 gatctgcctgcctctgcctccc 74
          ||||||||||||||||||||||
Sbjct: 61 gatctgcctgcctctgcctccc 40




>RF00100;7SK;AABR04018170.1/31400-31722 10116:Rattus norvegicus
           (Norway rat)
          Length = 323

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 26  agaccaggctggcctcgaactcacagagat 55
           |||||||| |||||| ||||||||||||||
Sbjct: 306 agaccaggttggccttgaactcacagagat 277