miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AP009725.1/8577-8386 34305:Lotus japonicus
Length = 192
Score = 103 bits (52), Expect = 1e-21
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 154 tggtgcgcttctgattcaacgatgcgggagctgcattcggccgtcactgtcacgtcttgg 213
||||| ||||||||| |||||||||||||||||||||| | | ||||||||| | |||||
Sbjct: 106 tggtgtgcttctgatccaacgatgcgggagctgcattcagtcatcactgtcatggcttgg 165
Query: 214 actgaaggggcctcttcatt 233
||||||||||||||||||||
Sbjct: 166 actgaaggggcctcttcatt 185
Score = 93.7 bits (47), Expect = 1e-18
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 24 gaaggggctcacttcagtccagtccgcggcggtagaa---ggctgtgactcagctgctga 80
||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||
Sbjct: 9 gaaggggctcacttcagtccagttcgaggcggtagaagatggctgagactcagctgctga 68
Query: 81 ctcgttggttcaagagttcaccatt 105
||||||||||| |||| |||||||
Sbjct: 69 ctcgttggttcgagagcacaccatt 93
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 81.8 bits (41), Expect = 4e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 24 gaaggggctcacttcagtccagtccgcggcggtagaaggctgtgactcagctgctgactc 83
||||| |||| |||||||||||||| |||||| || ||||| |||| ||||||||||||
Sbjct: 9 gaaggagctctcttcagtccagtccaaggcggttgagggctgggacttagctgctgactc 68
Query: 84 gttggttcaagag 96
|||||||||||||
Sbjct: 69 gttggttcaagag 81
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 200 ctgtcacgtcttggactgaaggg 222
|||||||||||||||||||||||
Sbjct: 154 ctgtcacgtcttggactgaaggg 176
