miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 89.7 bits (45), Expect = 1e-17
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 108 ccggcggcgaattggatcccgccttgcatcaactgaatcggaggccgcagtga 160
||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 67 ccggcggtgaattggatcccgccttgcatcaactgaatcggaggccgcggtga 119
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 85.7 bits (43), Expect = 2e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 114 gcgaattggatcccgccttgcatcaactgaatcggaggccgcagtga 160
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 131 gcgaattggatcccgccttgcatcaactgaatcggaggccgcggtga 177
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 77.8 bits (39), Expect = 5e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 114 gcgaattggatcccgccttgcatcaactgaatcggaggccgcagtga 160
||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 28 gcgaattggatcccgccttgcatcaactgaatcggagaccgcggtga 74
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 73.8 bits (37), Expect = 8e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactgaatcggaggccgcagtga 160
||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcggagaccgcggtga 153
Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactgaatcgga 149
||||||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatcgga 124
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggaggccg 154
||||||||||||||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggccg 128
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 63.9 bits (32), Expect = 8e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactgaatcg 147
||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 46 ggtctctaattcgcttggtgcaggtcgggaaccg 79
||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaaccg 42
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 122 gatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatcggag 126
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaacc 78
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcggag 123
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaacc 78
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 63.9 bits (32), Expect = 8e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcgga 149
||||||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatcgga 128
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaacc 78
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctgattcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 124 tcccgccttgcatcaactgaatc 146
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
||||| |||||||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatcggag 122
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcggga 75
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||| ||||||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatcggag 123
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaacc 78
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 117 aattggatcccgccttgcatcaactgaatcggaggccgcagtga 160
|||||||||| |||||||||||| ||||||||||| |||||||
Sbjct: 67 aattggatcctgccttgcatcaatcgaatcggaggctgcagtga 110
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 ctctaattcgcttggtgcaggtcgggaacc 78
|||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 124 tcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcagattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 44 gcggtctctaattcgcttggtgcaggtcgggaac 77
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 122 gatcccgccttgcatcaactgaatc 146
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 128 gccttgcatcaactgaatcggag 150
|||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggag 114
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 attcgcttggtgcaggtcgggaac 77
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 tcccgccttgcatcaactgaatcgga 149
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
