miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 178 bits (90), Expect = 2e-44
Identities = 161/182 (88%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 16 ggtaagtgagctttcttcagtccactcataggtggcagtaagatt-caattagctgccga 74
|||||| |||||||||| ||||||||||| |||| || ||||||| ||||||||||| ||
Sbjct: 6 ggtaagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctga 65
Query: 75 ctcattcatccaaatgctgagtagtg-atactcttaaagatactcatcaaatgagtgaat 133
|||||||||||||||| |||||| ||| | | |||||||||||||||||||||
Sbjct: 66 ctcattcatccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaat 125
Query: 134 gatgcgggagacaaattgattcttaagtttcctgtacttggactgaagggagctcccttt 193
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 126 gatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcccttt 185
Query: 194 tc 195
||
Sbjct: 186 tc 187
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 147 bits (74), Expect = 7e-35
Identities = 153/177 (86%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 18 taagtgagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactc 77
|||| |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactc 66
Query: 78 attcatccaaatgctgagtagtgatactcttaaagat-actcatcaaatgagtgaatgat 136
|||||||||||| |||||| | | | |||| || || |||||||||||||||
Sbjct: 67 attcatccaaatactgagt--taaaggacaaggagattacccagtaaatgagtgaatgat 124
Query: 137 gcgggagacaaattgattcttaagtttcctgtacttggactgaagggagctcccttt 193
|||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct: 125 gcgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctcccttt 181
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 127 bits (64), Expect = 7e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 122 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 181
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 182 ggagctcccttt 193
||||||||||||
Sbjct: 203 ggagctcccttt 214
Score = 109 bits (55), Expect = 2e-23
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 18 taagtgagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactc 77
|||| |||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||
Sbjct: 8 taagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactc 67
Query: 78 attcatccaaatgctgagt 96
|||||||||||| ||||||
Sbjct: 68 attcatccaaatactgagt 86
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 115 bits (58), Expect = 3e-25
Identities = 144/172 (83%), Gaps = 13/172 (7%)
Strand = Plus / Plus
Query: 23 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgact-cattc 81
|||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 82 atccaaatgctgagtagtgatactcttaaaga-tactcatcaaatgagtgaatgatgcgg 140
|||||||| ||| | |||| || ||| || |||||| ||||||||||||
Sbjct: 73 atccaaatactg-----------tgttaaggactacccagtaaatgattgaatgatgcgg 121
Query: 141 gagacaaattgattcttaagtttcctgtacttggactgaagggagctccctt 192
||||||||||| ||||||| | ||||| |||||||||||||||||||||||
Sbjct: 122 gagacaaattggatcttaagctccctgtgcttggactgaagggagctccctt 173
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 113 bits (57), Expect = 1e-24
Identities = 140/169 (82%), Gaps = 14/169 (8%)
Strand = Plus / Plus
Query: 23 gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 82
||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcattca 72
Query: 83 tccaaatgctgagtagtgatactcttaaagatactcatcaaatgagtgaatgatgcggga 142
|||||||||||| | ||| || ||| |||||||||||||||||||||
Sbjct: 73 tccaaatgctgaat-gtg-------------tattcagtaaatgagtgaatgatgcggga 118
Query: 143 gacaaattgattcttaagtttcctgtacttggactgaagggagctccct 191
||||||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct: 119 gacaaattgtatcttaagcttcctgttattggactgaagggagctccct 167
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 6e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 116 ctcatcaaatgagtgaatgatgcgggag-acaaattgattcttaagtttcctgtacttgg 174
|||| ||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 175 actgaagggagctcc 189
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 71.9 bits (36), Expect = 3e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 122 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 181
|||||| ||| |||||||||||||||||| | |||||| ||||| | |||||||||||
Sbjct: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
Query: 182 ggagctcccttt 193
||||||||||||
Sbjct: 168 ggagctcccttt 179
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 67.9 bits (34), Expect = 5e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 122 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 181
|||||| ||||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 182 ggagctccct 191
||||||||||
Sbjct: 172 ggagctccct 181
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 57 gattcaattagctgccgactcattcatccaaat 89
||||||||||||| |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 165 ctgtacttggactgaagggagctccctttt 194
|||| |||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccctttt 190
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaat 89
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaat 89
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 171 ttggactgaagggagctcccttt 193
|||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttt 185
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 122 aaatgagtgaatgatgcgggagacaaattg 151
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaat 89
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 113 atactcatcaaatgagtgaatgatgcgggagacaaattg 151
|||||| | |||||| |||||||||||| ||||||||||
Sbjct: 103 atactcgttaaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 165 ctgtacttggactgaagggagctcccttt 193
|||| ||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctcccttt 175
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattcatccaaa 88
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 165 ctgtacttggactgaagggagctcccttt 193
|||| ||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctcccttt 191
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 170 cttggactgaagggagctccctttt 194
|||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctttt 183
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 170 cttggactgaagggagctccctttt 194
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaatgctgagt 96
||||||||| |||| |||||||||||||| ||||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 165 ctgtacttggactgaagggagctccctt 192
|||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattcatccaaa 88
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 170 cttggactgaagggagctccctt 192
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 170 cttggactgaagggagctccct 191
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 aattagctgccgactcattcat 83
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 170 cttggactgaagggagctccct 191
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgccgactcattcatccaaatgc 91
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgccgactcattcatccaaatgc 91
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgccgactcattcatccaaatgc 91
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
