miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ttgtttgcgggtgtagcatcatcaagattcacatgcaaa 39
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
|||||||||||||||||||||||||||| |||||
Sbjct: 126 gtgagaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ttgtttgcgcatgtagcatcatcaagattcacatgcaaa 39
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagccataaa 130
|||||||||||||||||||||||| || |||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaataaa 112
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
||||||||||||||||||||||||||||||||||
Sbjct: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||| | || |||||||||||||||||||| ||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaa 39
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
||||||||||||||||||||||||||||||||||
Sbjct: 96 gtgagaatcttgatgatgctgcatcagccataaa 129
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaac 49
|||||||| | || |||||||||||||||||||| |||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaac 40
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccata 128
||||||||||||||||||||||||||||||||
Sbjct: 127 gtgagaatcttgatgatgctgcatcagccata 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||| | || ||||||| |||||||||||||||||
Sbjct: 1 ttgtttgcaggtgcagcatcaccaagattcacatgcaaa 39
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||||| || |||||||||||||||||||||||||
Sbjct: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaa 39
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
||||||||||||||||||||||||| || |||||
Sbjct: 108 gtgagaatcttgatgatgctgcatcggcaataaa 141
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||| ||||||||| ||||||||||||||||||||
Sbjct: 1 ttgtttgctgatgtagcaccatcaagattcacatgcaaa 39
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 90 ttttgatgtgagaatcttgatgatgctgcatcagccataaa 130
|||||| |||||||||||||||||||||||| ||||||||
Sbjct: 121 ttttgaagtgagaatcttgatgatgctgcattggccataaa 161
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgcaaa 39
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatc 112
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagccataaa 130
|||||||||||||||||||||||| ||||||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagccataaa 130
||||||||||||||||||||||||||| |||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 tgtagcatcatcaagattcacatgcaaa 48
||||||||||||||||||||||||||||
Sbjct: 12 tgtagcatcatcaagattcacatgcaaa 39
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatc 121
|||||||||||||||||||||||||
Sbjct: 180 gtgagaatcttgatgatgctgcatc 204
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tgtttgcggatgtagcatcatcaagattcaca 42
|||||||||||| |||||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattcaca 33
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tgtttgcggatgtagcatcatcaagattcaca 42
|||||||||||| |||||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattcaca 33
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 91 tttgatgtgagaatcttgatgatgctgca 119
||||||||| |||||||||||||||||||
Sbjct: 101 tttgatgtgggaatcttgatgatgctgca 129
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgc 45
|||||||| | |||||||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgc 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatc 111
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagc 137
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagc 162
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatcagc 142
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatcagc 133
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagc 116
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagc 106
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
||||||||||||||||||||||||| || |||||
Sbjct: 129 gtgagaatcttgatgatgctgcatcggcaataaa 162
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgcaaa 48
|||||||||| || |||||| |||||||||||||||||
Sbjct: 1 ttgtttgcgggtgctgcatcaccaagattcacatgcaaa 39
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatca 122
|||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatca 107
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatca 122
|||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatca 101
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 91 tttgatgtgagaatcttgatgatgctgca 119
|||||| ||||||||||||||||||||||
Sbjct: 93 tttgatttgagaatcttgatgatgctgca 121
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 10 ttgtttgcggatgtagcatcatcaagattcacatgca 46
||||| ||||||| |||||||||||||||| ||||||
Sbjct: 111 ttgttggcggatgcagcatcatcaagattctcatgca 75
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagcca 126
|||||||||||||||||||||||| ||||
Sbjct: 79 tgagaatcttgatgatgctgcatccgcca 107
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 68 gaatcttgatgatgctgcatcagc 91
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 84 tgagaatcttgatgatgctgcatc 107
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcatcagc 119
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tgtttgcggatgtagcatcatcaagattcaca 42
||||||| |||| |||||||||||||||||||
Sbjct: 2 tgtttgctgatggagcatcatcaagattcaca 33
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tgtttgcggatgtagcatcatcaagattcaca 42
|||||||||||| |||||||| ||||||||||
Sbjct: 2 tgtttgcggatgcagcatcatgaagattcaca 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagc 129
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatcagc 7
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcat 120
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 ttgtttgcggatgtagcatcatcaagattc 39
|||| |||||||| ||||||||||||||||
Sbjct: 109 ttgtctgcggatgcagcatcatcaagattc 80
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tttttgatgtgagaatcttgatgatgctgca 119
|||||| | ||||||||||||||||||||||
Sbjct: 72 tttttggtttgagaatcttgatgatgctgca 102
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgca 119
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 tgtgagaatcttgatgatgctgcatc 121
|||| |||||||||||||||||||||
Sbjct: 204 tgtgggaatcttgatgatgctgcatc 229
