miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 81.8 bits (41), Expect = 6e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 305 tgtggttccatcaggtcatcttgcagcttcaatcactcaat 345
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgtggttccatcaggtcatcttgcagcttcaatcactcaat 152
Score = 71.9 bits (36), Expect = 6e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 19 ggtttgagaggttaaagctgccagcatgatctggtaatca 58
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2 ggtttgagaggttgaagctgccagcatgatctggtaatca 41
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 73.8 bits (37), Expect = 2e-12
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 307 tggttccatcaggtcatcttgcagcttcaatcactca 343
|||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggttccatcaggtcatcttgcagcttcaatcactca 431
Score = 69.9 bits (35), Expect = 2e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctggtaat 56
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 73.8 bits (37), Expect = 2e-12
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 307 tggttccatcaggtcatcttgcagcttcaatcactca 343
|||||||||||||||||||||||||||||||||||||
Sbjct: 396 tggttccatcaggtcatcttgcagcttcaatcactca 432
Score = 69.9 bits (35), Expect = 2e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctggtaat 56
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 65.9 bits (33), Expect = 4e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 309 gttccatcaggtcatcttgcagcttcaatcactcaat 345
|||||||||||||||||||||||||||||| ||||||
Sbjct: 305 gttccatcaggtcatcttgcagcttcaatccctcaat 341
Score = 61.9 bits (31), Expect = 6e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctggtaat 56
||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 tggtttgagagattgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctggt 53
|||||||||||||| |||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggt 36
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 314 atcaggtcatcttgcagcttcaatcactca 343
||||||||||||||||||||||||||||||
Sbjct: 321 atcaggtcatcttgcagcttcaatcactca 350
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 56.0 bits (28), Expect = 4e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctggt 53
|||| ||||||||| |||||||||||||||||||||
Sbjct: 1 tggtgtgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 52.0 bits (26), Expect = 6e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctg 51
|||| ||||||||| |||||||||||||||||||
Sbjct: 1 tggtgtgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 aagctgccagcatgatctggtaatc 57
|||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctggtaatc 40
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 aagctgccagcatgatctggtaatc 57
|||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctggtaatc 40
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 33 aagctgccagcatgatctggtaatc 57
|||||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctggtaatc 40
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 48.1 bits (24), Expect = 9e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctggt 53
|||| ||||||| | |||||||||||||||||||||
Sbjct: 1 tggtgtgagaggctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 46.1 bits (23), Expect = 4e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 18 tggtttgagaggttaaagctgccagcatgatctgg 52
|||| |||||| || ||||||||||||||||||||
Sbjct: 1 tggtgtgagagcttgaagctgccagcatgatctgg 35
