miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 100 gctcatgcactgcctcttccctggctct 127
||||||||||||||||||||||||||||
Sbjct: 114 gctcatgcactgcctcttccctggctct 141
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatggagtcatcaaca 47
||||| ||||||||||||||||||||||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagtcattaaca 56
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 tgcactgcctcttccctggctct 127
|||||||||||||||||||||||
Sbjct: 86 tgcactgcctcttccctggctct 108
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus
trichocarpa
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ggggaacaggcagagcatggatggag 38
||||||||||||||||||||||||||
Sbjct: 21 ggggaacaggcagagcatggatggag 46
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 catgcactgcctcttccctggct 125
|||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggct 101
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 ctcatgcactgcctcttccctggct 125
|||||||||||||||||||||||||
Sbjct: 81 ctcatgcactgcctcttccctggct 105
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 tgttgtgattctgctcatgcactgcctcttccctggc 124
||||||| ||| ||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatggagtcatcaacacaata 52
||||| ||||||||||||||||||| ||||||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagctatcaacaaaata 61
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 103 catgcactgcctcttccctggctct 127
|||||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggctct 110
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 catgcactgcctcttccctggctc 126
||||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggctc 109
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgcactgcctcttccctggctc 126
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgcactgcctcttccctggctc 126
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgcactgcctcttccctggctc 126
||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctc 166
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 tgcactgcctcttccctggctc 126
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164